Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01600 ATGTCGTATCGCCCAACCGGAAACTCAAGGACCGATGTCCGCCGGAGCCGCTACAAGGTGGCTGTCGACGCCGAGGAGGGTCGCCGGCGGCGAGAAGACACCATGGTGGAGATCAGGAAGAACCGAAGGGAAGAGAGCTTACAGAAGAAGCGGCGCGAGGGTCTCCAAGCACAGCAGATTCCCGCTTCGGCACAATCCACTGTGCTAGAGAAGAAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCCAGATGCCGTGATCTTGTACTCAGTCATGGTGCTCTGCTTCCTCTGTTGGCGCAATTGAATGAACATGCTAAACTTTCCATGCTTAGGAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCCCTTGCTAGTCTTATCCATTCAAATGATGAAGAAGTCTTGACCGATGCGTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTCTGTCCCCGGCTAGTTGAGCTTTTAATGCACCCATCCCCTTCAGTTCTAATTCCTGCTCTTCGAACAGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGATTATCATCAACCATCAAGCTCTTCCTTGCCTTCTTAATCTTTTGTCTAATACTTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGTAATAAACAGCAGATTCAGGCTGTAATTGAGTCTAATATTATTGGTCCTTTGGTCAGCCTTCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGGCTGCTTGGGCTATATCAAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTGGTAAGCCAAGGGTGTATTAAGCCCTTGTGCGACCTTCTCATCTGTCCTGATCCTAGAATTGTGACAGTTTGTTTGGAAGGACTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATATGGGCAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGATGCGGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACATACTGGTTGGAGGAAGATGACGAGACGATGCCTCCAGGGGATGAAGATATTCGTGTTTTTTTCTTGGGAGTTTTGGCTGGTTTAAAGACGTCCAGTACCACAGGACGACAATTGGGTCAAGTTAATGCTTTCCTTGTGTGCGTCCTTTAA 1311 0.4531 MSYRPTGNSRTDVRRSRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQAQQIPASAQSTVLEKKAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQIIINHQALPCLLNLLSNTYKKSIKKEACWTISNITAGNKQQIQAVIESNIIGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPPGDEDIRVFFLGVLAGLKTSSTTGRQLGQVNAFLVCVL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01600 436 PIRSF Importin_alpha 6 68 IPR024931 GO:0005737|GO:0006606|GO:0061608
Aip09g01600 436 PIRSF Importin_alpha 59 407 IPR024931 GO:0005737|GO:0006606|GO:0061608
Aip09g01600 436 Pfam Importin beta binding domain 14 59 IPR002652 GO:0006606|GO:0061608
Aip09g01600 436 Gene3D - 62 390 IPR011989 -
Aip09g01600 436 PANTHER IMPORTIN ALPHA 64 413 - -
Aip09g01600 436 PANTHER IMPORTIN ALPHA 4 68 - -
Aip09g01600 436 Gene3D - 13 52 IPR036975 GO:0006606
Aip09g01600 436 MobiDBLite consensus disorder prediction 40 59 - -
Aip09g01600 436 SUPERFAMILY ARM repeat 16 394 IPR016024 -
Aip09g01600 436 PANTHER IMPORTIN SUBUNIT ALPHA 64 413 - -
Aip09g01600 436 PANTHER IMPORTIN SUBUNIT ALPHA 4 68 - -
Aip09g01600 436 Pfam Atypical Arm repeat 351 397 IPR032413 -
Aip09g01600 436 SMART arm_5 83 125 IPR000225 GO:0005515
Aip09g01600 436 SMART arm_5 127 166 IPR000225 GO:0005515
Aip09g01600 436 SMART arm_5 253 293 IPR000225 GO:0005515
Aip09g01600 436 SMART arm_5 210 251 IPR000225 GO:0005515
Aip09g01600 436 SMART arm_5 296 336 IPR000225 GO:0005515
Aip09g01600 436 SMART arm_5 168 208 IPR000225 GO:0005515
Aip09g01600 436 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Aip09g01600 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 179 IPR000225 GO:0005515
Aip09g01600 436 Pfam Armadillo/beta-catenin-like repeat 138 165 IPR000225 GO:0005515
Aip09g01600 436 Pfam Armadillo/beta-catenin-like repeat 169 207 IPR000225 GO:0005515
Aip09g01600 436 Pfam Armadillo/beta-catenin-like repeat 297 334 IPR000225 GO:0005515
Aip09g01600 436 Pfam Armadillo/beta-catenin-like repeat 253 292 IPR000225 GO:0005515
Aip09g01600 436 Pfam Armadillo/beta-catenin-like repeat 211 251 IPR000225 GO:0005515
Aip09g01600 436 Pfam Armadillo/beta-catenin-like repeat 84 125 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01600 Aip-Chr9 33558497 33561834 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01600 132 358 U-box Gene Family AT2G23140 23.684 2.64e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01600 K15042 - gmx:100789135 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01600 09 33558497 33561834 Aip09g01600 09 33558497 33561834 ECH
Aip04g01057 04 15376990 15380360 Aip09g01600 09 33558497 33561834 ECH