Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01578 ATGAAAGAAAGGAAATGGACGCGATGCCTCACCACAACAACAACCACCTCTCATCCCTCAAATCCTTCTTCATCCCTTCTTCTTCCGCCCAGAATTGTCCATAATGTCTGGAAAGACATAATCCTAACCCCCTCTCAAAGAGACCCACCTCACCATAAGCACCACCCGTTCGAAGAAATGACCCTTAAGGCTCTCCTCTCAAAAAATGCTGCCGTCATTGGTGACGACGTCATCTCTATTGTTTCTCTTTATAATCATCATCCTGTTCCTCATCGGTTCCTGCAGGTGCCCGCCGTTGAAAGCTCATCCTCCTCCGCAGCTGCTTGGTCCAGGGAACGCAAACAGGGATTAAAGATTGGATTTAGAACAGTGTGTGGAAATGGCAAGGCCCCGAAAAGATTAAATGCTTCACTTGGATGGCTACCCACCAAAAATTACTCACAGCACAAAGGAGAGCGCATTTCCTTAGTTTGGACTCTAGCTGCCATCGATGTAAAGGAGTGCCTGAAACTATACAACATGTTTTACGAGATTGCCCAACGACATCCAGGTTATGGGAATAAAGAACTCTTCTCACCACCCTACCAAACATCCCACAATGAACATGTTATAGTTCTGAACCATGCTTATACTATTAAGATAGCTTTCGAAAAATCTGGCCTAACCCCTCAAGGAAGAAGGCACAGAAAAGTCCATGTAGCGTGGAGTTACCCACCTGAAAATTGGATAAAACTTAATATGGACGGTGCAGCATCAACAAATCCGAATGCAGGAGGATGCGGGGGTGTTATTAGGAATGAGCAAGGAAGATGGGTGGCTGGTTTTATGGCCAATCTAGGATGCTGTTCGGCATTTCGGGCAGAAATGTGGGGCATCTATCATGGATTAAAAATTGTTTGGGATCTAGGCTTAAGAAGGATTATAGTGGAGTCAAATTCAACAACAGTAGTCACTATACTTAACAAGAAGGAGGGGTTGCACTCCCATCCTAAACCTCTTGTGAGAAGCATTGCGAACTTGATGCAAAAGAATTGGGAACTAAGAATAGAAAATATATACAGAGAGGGCAACAGATGTGCGCATTGGCTGGCCAAAGAAAGTTTAAAATCACCATCAGGATttccatttctgtttctgcttctcccagAAAGACCCCTTACAGAGAAAGGTATATGGAAGTTAGATACATGGGATTGGACTGAGACGCTGAATGAAAAGTTCCAGAGATGTTGGGTAGAAGAATCTCGGAGGTTGAAACCTTGGCTTTTAAGAGCATTGAATGCAAGCCTTGGTGGGAGGTTTTGGTGGGGAGGATTTTGGAAGATTGGAAATGATCTCTCCCAGTTTTTGGGCCCACTAATATTGAATCAGCTGCTAGAGTCTATGCAAAATGGTGATCCAGCCTGGATTGGATACGTTCTTGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGATTCCGGCTAAGATCAACACTGGTAGCTGCTGTATTTCGCAAATCATTAAGGCTTACCCATGAAGCTCGAAAGCAATTTGCATCTGGAAAAATAACCAACTTGATGACTACTGATGCCAAAGCACTTCAGGCATGGTTTCCTTCTATTCAAATATGTCAGTCACTTCATACTCTGTGGTCAGCTCCGTTCCACATTACCATTGCCATGGTTCTTCTTTATCAACAACTAGGAGTTGCTTCCCTTTTGGGCGCTTTGATGCTAGTCCTTATGTTTCCATTACAGCAGACATTTATCATCAGTAGAATGCAGAAGTTGTCTAAGGAAGGATTACAACGTACAGACAAGAGAATTGGCCTTATGAATGAAGTTTTGGTAGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTTCAGAATGTCCGAGATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTTAAATGGATTCATACTGAATAATATTCCAGTTTTTGTAACTGTGATTTCATTTGGAATGTTCACCTTACTTGGAGGGAATTTGACACCCGCAAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTTCAGTTTCCTCTTTTCATGCTTCCTAATATTATAACTCAGAAGAGAGAATACTTTTTACCAAATCCACCGCTTGAGCCAGGATTACCAGCCATCTCAATCAAAAACGGAAACTTCTCCTGGGATTCCAAGGCAGAAAGGCCTACATTGGCAAACATAAACTTGGATATACCTGTTGGTAGCCTAGTTGCAGTTGTTGGAAGTACAGGAGAAGGGAAAACATCACTAGTATCTGCAATGCTTGGAGAACTTCCTGCAGTTGTAGGTTCAACTGTTGTTATGAGAGGGACAGTTGCTTATGTACCCCAAGTCTCTTGGATTTTTAATGCAACTGTGCGGGATAATGTTTTATTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCAATAGATGTGACTGAACTACGACATGACCTTGAGTTACTGCCTGGTGGTGATCTTACCAAAATTGGAGAAAGAGATGCGCATGTCGCTAAACAGGTTTTTGATAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACAAATCAACTGCATTTCCTTTCACAGGTGGATAGAATCATTTTGATCCATGAAGGTACTGTGAAAGAGGAGGGAACATTTGAGGAGCTCTCTAACCAGGGGCCATTGTTCCAAAAGCTTATGGAAAATGCTGGAAAGATGGAGGAGTATGAAGAAGAAACGGTAGATACTGAAACTGCTGATCCAAAGTCCTCTTCAAAACAGGTGGCCAATGGAGAACTTAATGATACTGCAAAGAGTGGGAGTAAGGCAAAAGAAGGAAAATCTGTCCTTATTAAACAGGAAGAACGGGAAACAGGTGTTGTCAGTATGAAAGTTTTAGCAAGATACAAGACTGCATTAGGAGGTCTTTGGGTGGTTGTAATACTCTTTGGATGCTATTTCTTAACAGAGGTGTTACGAATTTCAAGTAGCACATGGTTGAGCCATTGGACTGATCAGAGTGCTTCAGTGGGCTATGATCCTGGATTTTATAATCTGATATATGCAGCTCTATCATTTGCTCAGGTTATGGTGACTTTAACAAATTCTTATTGGTTGATCATATCAAGTCTATATGCAGCCAGAAGGTTTGCAAAGGATTTAGGTGACATTGATCGTAATGTTGCCCCATTTGTCAATATGTTTCTGGGTCAAGTGTCTCAGCTCCTTTCAACATTCGTCCTGATAGGGATTGTCAGCACAATGTCCTTGTGGGCAACAATGCCGTTGTTGGTACTGTTTTATGGAGCATATCTCTACTATCAGAGCACCGCCCATGAAGTAAAGTGCTTAGATTCAATTAGTAGATCCCCTGTTTATGCACAATTTGGAGAAGTACTTAATGGCCTATCAACAATTTGTGCTTACAAAGCTTATGACGGCATGGCTGATATCAATGGAAAGTCGATGGACAACAACATACAATTCACTCTGGTGAACATGAGTGGAAATCGATGGCTTGCAATTCGATTAGAAACGCTGGGAGGTCTCATGATATGGTTTACTGCAGCCTTTGCGTCGGGACCCGCTTTGAACGTTAACAGTTTGCTTACTGGTGTGTTCAGGCTTGCTAGTTTGGCTGAGAATAGTCTAAATGCTGTTGAGCGTGTTGGCACTTATATAGATTTGCCTTCAGAGGCACCATCCATCATTGAGGATAGTCGCCCCCCTCCAGGCTGGCCCTCATCTGGATCAATCGGATTTGAGGATGTTGTACTTCGATACAGGCCTGAACTTCCTCCTGTCCTTCATGGCTTGAATTTCACAATTTTTCCAAGCGATAAGTTTGGGGTCTCTGATTTGTGTAAAGTTCTTGGCATTATACCACAGTCCCCTGTTTTGTTTTCAGGAACTGTAAGGTTTAATCTTGACCCTTTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTCATTCGGAGGAATTCTTTGGGGCTGGATGCTGAGGTCTCTGAGGCAGGCGAGAACTTCAGTGTTGGGCAGAGGCAACTGTTGAGTCTCTCTCGGGCATTATTGCGTAGATCAAAGATATTAGTACTTGATGAAGCCACTGCAGCAGTAGATGTTAGAACAGATGCCCTCATACAGAAAACAATTCCAGAGGAATTTAAATCGTGCACCATGATCATCATTGCTCATCGTCTTAACACCATCATAGACTGTGATCGGATTCTTTTGCTTGATGGTGATAAGGTTCTTGAATATGATACCCCTGAAGAACTGCTATCAAATGAAGGCAGTTCGTTCTCTAAGATGGTGCAAAGTACAGGAGCCGCAAATGCCCAATATCTACGCAGCTTAGCATTCAGGAGTAAGTCAGATAGGGAAGAGAGTAAGCATAATGATGGCCAGAAAAAATGGCTTGCTTCGTCTCGCTGGGCTGCTGCAGCTCAATTTGCCCTTGCCGTCAGTCTCACCTCATCACAGAATGACCTGAAAAGATTGGAAGTGGAAGAAGAGAATAGCATACTCAAGAAAACAAGGGATGCTGTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAGAGAAATCGAGGAATCTTTAGACCGATACCAAATATCCTCGGACAGTTGGTGGTCATTACTCTACAAGATGATTGAAGGTCTTGCAATGATGAGCAGACTGGCCAGGAGCAGGCTTCATCAATCAGACTTTGATTTTGATGATAGATCAATTAACTTTGATCAAGTTGATATGTAG 4860 0.4243 MKERKWTRCLTTTTTTSHPSNPSSSLLLPPRIVHNVWKDIILTPSQRDPPHHKHHPFEEMTLKALLSKNAAVIGDDVISIVSLYNHHPVPHRFLQVPAVESSSSSAAAWSRERKQGLKIGFRTVCGNGKAPKRLNASLGWLPTKNYSQHKGERISLVWTLAAIDVKECLKLYNMFYEIAQRHPGYGNKELFSPPYQTSHNEHVIVLNHAYTIKIAFEKSGLTPQGRRHRKVHVAWSYPPENWIKLNMDGAASTNPNAGGCGGVIRNEQGRWVAGFMANLGCCSAFRAEMWGIYHGLKIVWDLGLRRIIVESNSTTVVTILNKKEGLHSHPKPLVRSIANLMQKNWELRIENIYREGNRCAHWLAKESLKSPSGFPFLFLLLPERPLTEKGIWKLDTWDWTETLNEKFQRCWVEESRRLKPWLLRALNASLGGRFWWGGFWKIGNDLSQFLGPLILNQLLESMQNGDPAWIGYVLAFSIFVGVVFGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAKALQAWFPSIQICQSLHTLWSAPFHITIAMVLLYQQLGVASLLGALMLVLMFPLQQTFIISRMQKLSKEGLQRTDKRIGLMNEVLVAMDTVKCYAWESSFQSKVQNVRDDELSWFRKASLLGALNGFILNNIPVFVTVISFGMFTLLGGNLTPARAFTSLSLFAVLQFPLFMLPNIITQKREYFLPNPPLEPGLPAISIKNGNFSWDSKAERPTLANINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPAVVGSTVVMRGTVAYVPQVSWIFNATVRDNVLFGSAFDPIRYERAIDVTELRHDLELLPGGDLTKIGERDAHVAKQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILIHEGTVKEEGTFEELSNQGPLFQKLMENAGKMEEYEEETVDTETADPKSSSKQVANGELNDTAKSGSKAKEGKSVLIKQEERETGVVSMKVLARYKTALGGLWVVVILFGCYFLTEVLRISSSTWLSHWTDQSASVGYDPGFYNLIYAALSFAQVMVTLTNSYWLIISSLYAARRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFVLIGIVSTMSLWATMPLLVLFYGAYLYYQSTAHEVKCLDSISRSPVYAQFGEVLNGLSTICAYKAYDGMADINGKSMDNNIQFTLVNMSGNRWLAIRLETLGGLMIWFTAAFASGPALNVNSLLTGVFRLASLAENSLNAVERVGTYIDLPSEAPSIIEDSRPPPGWPSSGSIGFEDVVLRYRPELPPVLHGLNFTIFPSDKFGVSDLCKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIPEEFKSCTMIIIAHRLNTIIDCDRILLLDGDKVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLAFRSKSDREESKHNDGQKKWLASSRWAAAAQFALAVSLTSSQNDLKRLEVEEENSILKKTRDAVITLQGVLERKHDREIEESLDRYQISSDSWWSLLYKMIEGLAMMSRLARSRLHQSDFDFDDRSINFDQVDM 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01578 1619 ProSitePatterns ABC transporters family signature. 1375 1389 IPR017871 GO:0005524
Aip09g01578 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 383 858 - -
Aip09g01578 1619 MobiDBLite consensus disorder prediction 931 965 - -
Aip09g01578 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 435 721 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip09g01578 1619 CDD ABC_6TM_ABCC_D2 1003 1251 IPR044726 GO:0140359
Aip09g01578 1619 Gene3D ABC transporter type 1, transmembrane domain 412 722 IPR036640 GO:0005524|GO:0016021
Aip09g01578 1619 Gene3D ABC transporter type 1, transmembrane domain 966 1257 IPR036640 GO:0005524|GO:0016021
Aip09g01578 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 859 1308 - -
Aip09g01578 1619 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 1305 1491 - -
Aip09g01578 1619 CDD RNase_H_like 245 365 IPR044730 -
Aip09g01578 1619 Pfam ABC transporter transmembrane region 438 709 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip09g01578 1619 Pfam ABC transporter transmembrane region 1072 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip09g01578 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 383 858 - -
Aip09g01578 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1004 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip09g01578 1619 Pfam ABC transporter 754 843 IPR003439 GO:0005524
Aip09g01578 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1267 1464 IPR027417 -
Aip09g01578 1619 SUPERFAMILY ABC transporter transmembrane region 1000 1256 IPR036640 GO:0005524|GO:0016021
Aip09g01578 1619 MobiDBLite consensus disorder prediction 8 25 - -
Aip09g01578 1619 SUPERFAMILY ABC transporter transmembrane region 420 718 IPR036640 GO:0005524|GO:0016021
Aip09g01578 1619 Gene3D - 859 952 IPR027417 -
Aip09g01578 1619 Gene3D - 731 858 IPR027417 -
Aip09g01578 1619 ProSiteProfiles RNase H type-1 domain profile. 239 369 IPR002156 GO:0003676|GO:0004523
Aip09g01578 1619 Pfam Reverse transcriptase-like 246 366 IPR002156 GO:0003676|GO:0004523
Aip09g01578 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1199 1472 IPR003439 GO:0005524
Aip09g01578 1619 Gene3D - 241 369 IPR036397 GO:0003676
Aip09g01578 1619 MobiDBLite consensus disorder prediction 1 25 - -
Aip09g01578 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 738 926 IPR003439 GO:0005524
Aip09g01578 1619 Pfam ABC transporter 1313 1403 IPR003439 GO:0005524
Aip09g01578 1619 Gene3D - 1304 1474 IPR027417 -
Aip09g01578 1619 MobiDBLite consensus disorder prediction 944 961 - -
Aip09g01578 1619 SUPERFAMILY Ribonuclease H-like 241 371 IPR012337 -
Aip09g01578 1619 CDD ABC_6TM_ABCC_D1 436 718 IPR044746 GO:0140359
Aip09g01578 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 733 925 IPR027417 -
Aip09g01578 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 859 1308 - -
Aip09g01578 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1305 1491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01578 Aip-Chr9 32331315 32365201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01578 736 954 Calmodulin-binding Proteins AT2G36910 22.509 9.66e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01578 - - gmx:100801762 1984.15