Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01575 ATGATCTTCCAGTCTCGTCAATTTCCATTGGAAAGAACAAACTGTGGAGTTGGAAACCCTCACTGGCGACCATCCCAATCCAAACCATTTTGGGGCGTGCGTGCACAAAATATAAACATAGGAGGTGGTGTTGGAGGTGAAATCCCTGATCAGAATCGCCTCCAGTATGCTCTTCAGCATATCCATGGCATTGGGCGTTCCAAGGCTCATCACATTGTCTGCGAGCTCGGTGTCGAAAATAAATACGTTAGAGATCTTAGCAAGAGAGAGTTGTACTCCCTTCGCGAATTGCTTTCCAAGTACTTGATTGGGAATGATTTGAAAAAGTGTGTTGAAAGAGATGTGGGGAGGTTGGTGGGCATTCAGTGCTACAGAGGCATCAGGCATGTCGATGGCTTACCCTGTCGAGGCCAGCAAACTCATACCAATGCCCGCACCAGGAAGAGCAGGCCTACTTGGAGGGGAACAAGATGA 474 0.481 MIFQSRQFPLERTNCGVGNPHWRPSQSKPFWGVRAQNINIGGGVGGEIPDQNRLQYALQHIHGIGRSKAHHIVCELGVENKYVRDLSKRELYSLRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDGLPCRGQQTHTNARTRKSRPTWRGTR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01575 157 Gene3D - 44 108 - -
Aip09g01575 157 Pfam Ribosomal protein S13/S18 45 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip09g01575 157 MobiDBLite consensus disorder prediction 136 157 - -
Aip09g01575 157 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 25 152 - -
Aip09g01575 157 ProSiteProfiles Ribosomal protein S13 family profile. 44 149 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip09g01575 157 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 25 152 - -
Aip09g01575 157 ProSitePatterns Ribosomal protein S13 signature. 125 138 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip09g01575 157 Gene3D 30s ribosomal protein s13, domain 2 109 148 IPR027437 -
Aip09g01575 157 SUPERFAMILY S13-like H2TH domain 46 149 IPR010979 GO:0003676
Aip09g01575 157 Hamap 30S ribosomal protein S13 [rpsM]. 32 156 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01575 Aip-Chr9 32313853 32314745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01575 33 149 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.369 1.55e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01575 K02952 - gmx:100527465 215.698