Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01556 ATGTTCCATGAGCTATATGTGTTAAAGAGTAACAGTGAAGAACACCACTCTCCCTCACTCTCTCCTCATAGTGTCGACATCATGGTTTGCCAAGAACAAGAGGCATTAGTGAACAAAGTGCTTGACCTCTACCACAAGATTTCAACCTTAGACACCCTCAAACCTTCCCAAGATGTGGACACCCTCTTCACCCAACTCGTTCGCACATGCATCCCTCATACCCCATTCATCGACATCACTAAACTTTCCACAACCGTCCAAGAAGCTAGATCCGACCTAATTCGTCTTTGCGCCGAAGCCGAATCGCTCTTGGAGATGCATTATTCGGCGCTTTTGGTGTCGTCATCCTCCGGTGAGAACCCACTTGGACGTCTTCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTTAGTTGTCTCGAATTCAACATTCTTAGCCAGCACTGCCAGGCTGTTCCCACCAAGATTGCCTTCGTGGGTTCTGGCCCTCTTCCCTTAACCTCCATTGTCTTGGCTACCAACCACTTTCCCAACACCACATTCCATAATTATGACATAGACGCTTTGGCCAATTCTATGGCCAAGGCGTTGGTGTCTTCGGATCATGACCTGTCAAAGCGCATGGTCTTTCACACTAGCGACATATTAGATGTGTCGCATGGTTTGAACGAGTTCAATGTTGTTTTTCTTGCCGCGCTCGTGGGAATGAAAAATGAGGAGAAGAAGAAAGTAATTGACCATCTGGGTAAGTATATGGCACCTGGGGCATTTCTTATGGTAAGAAGTGCCTATAGTGCCAGAGCATTTCTATATCCGGTAGTCAATCCTTCTTTTGATCTCAAAGGATTTGAAGTTTTGTCCGTCTTTCACCCTACTGATGAGGTTATCAATTCTATTGTGATTGCGCAAAAATGTCCGATTATTTCAACATCGTCCAAAGAGGTTGAATCAGTCTTCAGTAATAATAACCTTCTCATCAATGGGAACATGATTGAGGAATTGGTAACTGAGGAGCAGCTTTAA 1092 0.4093 MFHELYVLKSNSEEHHSPSLSPHSVDIMVCQEQEALVNKVLDLYHKISTLDTLKPSQDVDTLFTQLVRTCIPHTPFIDITKLSTTVQEARSDLIRLCAEAESLLEMHYSALLVSSSSGENPLGRLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLSCLEFNILSQHCQAVPTKIAFVGSGPLPLTSIVLATNHFPNTTFHNYDIDALANSMAKALVSSDHDLSKRMVFHTSDILDVSHGLNEFNVVFLAALVGMKNEEKKKVIDHLGKYMAPGAFLMVRSAYSARAFLYPVVNPSFDLKGFEVLSVFHPTDEVINSIVIAQKCPIISTSSKEVESVFSNNNLLINGNMIEELVTEEQL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01556 363 Coils Coil 159 159 - -
Aip09g01556 363 PANTHER NICOTIANAMINE SYNTHASE 158 362 - -
Aip09g01556 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 189 315 IPR029063 -
Aip09g01556 363 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 28 332 IPR004298 GO:0030410|GO:0030418
Aip09g01556 363 PANTHER NICOTIANAMINE SYNTHASE 3 158 362 IPR004298 GO:0030410|GO:0030418
Aip09g01556 363 Pfam Nicotianamine synthase protein 159 329 IPR004298 GO:0030410|GO:0030418
Aip09g01556 363 Pfam Nicotianamine synthase protein 31 126 IPR004298 GO:0030410|GO:0030418
Aip09g01556 363 Gene3D Vaccinia Virus protein VP39 155 329 IPR029063 -
Aip09g01556 363 PANTHER NICOTIANAMINE SYNTHASE 32 125 - -
Aip09g01556 363 PANTHER NICOTIANAMINE SYNTHASE 3 32 125 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01556 Aip-Chr9 31026494 31027585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01556 28 357 Nicotianamine Synthase Gene Family AT5G04950 48.547 4.59e-108 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01556 K05953 - gmx:100803630 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01556 09 31026494 31027585 Aip09g01556 09 31026494 31027585 ECH