Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01551 ATGGAGGATTTTTACATCAAGTTGAGCAACAATAATAACAACAATTTTGAAGCTTGTTCTTCGGAGGAGGATGTTGTTGTAACCGCTTCCAAGTTGCATCTAACAGAAGCTACTACGAGTGTGGGCGTGGGTAGTAACTACCTCCTTCAACTTGCAGCACCCGACCCGGATATGTCGGATCCGGTTATTAAGGCTCAGATCGCCAACCATCCCCGCTATCCCGATTTGCTCTCTGCTTACATTCAATGTCAAAAGGTTGGAGCGCCGCCTGAAGTGGCGTCTCTGCTTGAAGAAATAAGCCGTGAGAGTCATCCAATGGATACTCGCCGCCGTCAGATTGGAGATGATCCCGAGCTTGATGACTTCATGGAATCATACTGCAATGTTCTTCATAAATACAAGGAGGAGCTGTCGAAGCCATTCAACGAAGCAACCTTGTTTTTGTGTAACATCGAATCACAACTCAGCAACCTTTGTAAGGGAACACTAACAATCTCTTTGGACACCAATAATAATCATCGATCCGATTTAAATGATGATTCAGATGAAGCAGCAGGGAGTTGTTCATCAGAGGTGGAAGGAATTGAATTTGGATATGGGACACGTGGCGTTGGAGATAAAGAGCTTAAGGAAATGTTGCTTCGTAAGTACAGTGGTTACCTTAGTAGCTTGAGAAAGGAGTTTCTAAAGAAAAGGAAAAAGGGTAAGCTTCCTAAAGATGCAAGGATTGCTCTCATGGATTGGTGGAACTCCCACTATAGATGGCCTTATCCTACGGAGGAGGAGAAATTGATGTTATCAGAGATGACTGGATTGGACATAAAGCAGATAAACAATTGGTTCATAAATCAGAGGAAACGCCATTGGAAACCATCTTCAGAGATGCGATTTGGTGTCATGGAAGGTgatttcgtGGCTACTCCGGAGGTTGCTGCTATATTGCGTGATGCCATGGACAGTGCTCGGCAGAAGCTCAAAGAACACAAAGAATCCGAGCATCAAGCTGCACATGTACTAAGTGCAGTTTACTCACATACGCGTGATGAGTGTCCCGTTAGTATGGATGAGCTACATGGCTCACGTCGTGTTCCTACGCGAGGTCGTCCAACGTCCACCAGACTTGGGGCAGATCTAGAAAAATCTATTAAAAAGAGGATACGCAAACACAAGAACACTCACAATCACAACAAGGGACCTAATGGTAATGCACAACCATCTCCTACCAATGTGGCATCTTCTTACAAAGATACGCAATGGGCTTGTTCAAAAATGACAGAGAATTTGGCTACGCATTCTGGCTCCTTCATATCACTATTGAATTCATTCCATAACGATGAACAATTGTGTATGTATACCtag 1359 0.4364 MEDFYIKLSNNNNNNFEACSSEEDVVVTASKLHLTEATTSVGVGSNYLLQLAAPDPDMSDPVIKAQIANHPRYPDLLSAYIQCQKVGAPPEVASLLEEISRESHPMDTRRRQIGDDPELDDFMESYCNVLHKYKEELSKPFNEATLFLCNIESQLSNLCKGTLTISLDTNNNHRSDLNDDSDEAAGSCSSEVEGIEFGYGTRGVGDKELKEMLLRKYSGYLSSLRKEFLKKRKKGKLPKDARIALMDWWNSHYRWPYPTEEEKLMLSEMTGLDIKQINNWFINQRKRHWKPSSEMRFGVMEGDFVATPEVAAILRDAMDSARQKLKEHKESEHQAAHVLSAVYSHTRDECPVSMDELHGSRRVPTRGRPTSTRLGADLEKSIKKRIRKHKNTHNHNKGPNGNAQPSPTNVASSYKDTQWACSKMTENLATHSGSFISLLNSFHNDEQLCMYT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01551 452 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Aip09g01551 452 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Aip09g01551 452 SMART ELK_2 208 229 IPR005539 GO:0003677
Aip09g01551 452 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Aip09g01551 452 Coils Coil 311 331 - -
Aip09g01551 452 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Aip09g01551 452 SMART HOX_1 230 295 IPR001356 GO:0003677
Aip09g01551 452 Pfam ELK domain 208 229 IPR005539 GO:0003677
Aip09g01551 452 SMART KNOX2_2 109 160 IPR005541 GO:0003677|GO:0005634
Aip09g01551 452 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 12 302 - -
Aip09g01551 452 MobiDBLite consensus disorder prediction 396 412 - -
Aip09g01551 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 302 - -
Aip09g01551 452 MobiDBLite consensus disorder prediction 390 412 - -
Aip09g01551 452 CDD homeodomain 254 292 IPR001356 GO:0003677
Aip09g01551 452 Gene3D - 226 297 - -
Aip09g01551 452 Pfam KNOX2 domain 112 159 IPR005541 GO:0003677|GO:0005634
Aip09g01551 452 SUPERFAMILY Homeodomain-like 230 299 IPR009057 -
Aip09g01551 452 Coils Coil 444 452 - -
Aip09g01551 452 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
Aip09g01551 452 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01551 Aip-Chr9 30909314 30921349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01551 9 301 Homeobox Transcription Factor Family AT1G23380 48.173 2.57e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip09g01551 KNOX2 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01551 - - gmx:100786114 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01551 09 30909314 30921349 Aip09g01551 09 30909314 30921349 ECH