Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01535 ATGGCACTTTCATTATCATCATCATCATCACAACCATCACAAGTAGATGTTCACTGCTTTCAAAGCCTTAAGAATAATGCAAATGCAAGTTCTCTCAATCGTGACACCTTCTACCTCAAACTCACTCACTTGTTCGATTCCTCTGGACTCACCCTAATTTTCAATGTCCGAGAAACACTGCTGGACTTGTACCTAGTTTACTTGGAGGTGACCACAAGAGGAGGATTCCATCAGGTTAGTCAAGAAAAGAAATGGGGCGAAGTGGCCTCGGCCCTGAGATTGGAAGGAAACATTGCAAGATTATCTGCTCAAGTTGAAAAGCTCTACTTGCAACTTCTTTACCAATTCGAGCAATTGTACTTCTACAGAGCTCCTACAAAGAGCAGCAAGACCACAGGTTTGCACAAGAGGAAGCAAATCTCATCCGAAACGACAGAAGAAGGAGGAGCTGGTTTCAATGTCCGAGAAACACTGCTGGACTTGTACCTAGTTTACTTGGAGGTGACCACAAGAGGAGGATTCCATCAGGTTAGTCAAGAAAAGAAATGGGGCGAAGTGGCCTCGGCCCTGAGATTGGAAGGAAACATTGCAAGATTATCTGCTCAAGTTGAAAAGCTCTACTTGCAACTTCTTTACCAATTCGAGCAATTGTACTTCTACAGAGCTCCTACAAAGAGCAGCAAGACCACAGGTTTGCACAAGAGGAAGCAAATCTCATCCGAAACGACAGAAGAAGGAGGAGCTGGGTTGGTCAAAGAGCAAGCTCTTCTTCTCGAACCTTCGGATGGCAAAGAAAAGAAGAAACGCCGAGGCATGGCACAAGGACAAAGAAGTGCATACCAGATGTTCCTGAAGCAAGAATGCACTCGGTTGAAAAGTTGTAACTCGACCTCAACCGGAAAGGGTATTCTCCACACGGCTATCGATTCGTGGAGGAATATGTCTCCACTTGAGAAACAGCCATATGTGGATGAATTCAAGAAGAACCAGGAAAAGTTCAAGAAAGGAATGATTATTGATGACAATGGAGAGCACAAAATAATGCAAAATGAGAAGGAAGAGAAGAACATGGCTCCTGCTAGTGTGTGTAATAGTGAGTACTACCAAGTAACTTCACAACCTGAGCCAGATAACAATAACTACACTACTCTCAACAACAATGCAGCAATAGGCTTAGCTTTTAATGTGACTGAAAAGTTTCCCAAGGATTCCGTGTTACTATTTGGCTTATAG 1233 0.4339 MALSLSSSSSQPSQVDVHCFQSLKNNANASSLNRDTFYLKLTHLFDSSGLTLIFNVRETLLDLYLVYLEVTTRGGFHQVSQEKKWGEVASALRLEGNIARLSAQVEKLYLQLLYQFEQLYFYRAPTKSSKTTGLHKRKQISSETTEEGGAGFNVRETLLDLYLVYLEVTTRGGFHQVSQEKKWGEVASALRLEGNIARLSAQVEKLYLQLLYQFEQLYFYRAPTKSSKTTGLHKRKQISSETTEEGGAGLVKEQALLLEPSDGKEKKKRRGMAQGQRSAYQMFLKQECTRLKSCNSTSTGKGILHTAIDSWRNMSPLEKQPYVDEFKKNQEKFKKGMIIDDNGEHKIMQNEKEEKNMAPASVCNSEYYQVTSQPEPDNNNYTTLNNNAAIGLAFNVTEKFPKDSVLLFGL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01535 410 SMART bright_3 32 122 IPR001606 GO:0003677
Aip09g01535 410 SMART bright_3 137 220 IPR001606 GO:0003677
Aip09g01535 410 Gene3D High mobility group box domain 259 338 IPR036910 -
Aip09g01535 410 Pfam HMG-box domain 274 337 IPR009071 -
Aip09g01535 410 ProSiteProfiles ARID domain profile. 31 121 IPR001606 GO:0003677
Aip09g01535 410 Pfam ARID/BRIGHT DNA binding domain 155 215 IPR001606 GO:0003677
Aip09g01535 410 Pfam ARID/BRIGHT DNA binding domain 34 117 IPR001606 GO:0003677
Aip09g01535 410 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 28 143 - -
Aip09g01535 410 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 152 402 - -
Aip09g01535 410 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 28 143 - -
Aip09g01535 410 Coils Coil 91 111 - -
Aip09g01535 410 SUPERFAMILY ARID-like 30 123 IPR036431 GO:0003677
Aip09g01535 410 SUPERFAMILY ARID-like 157 221 IPR036431 GO:0003677
Aip09g01535 410 ProSiteProfiles ARID domain profile. 124 219 IPR001606 GO:0003677
Aip09g01535 410 SUPERFAMILY HMG-box 262 335 IPR036910 -
Aip09g01535 410 Coils Coil 189 209 - -
Aip09g01535 410 SMART ARID_2 123 215 - -
Aip09g01535 410 SMART ARID_2 28 117 - -
Aip09g01535 410 Gene3D - 141 238 IPR036431 GO:0003677
Aip09g01535 410 Gene3D - 17 140 IPR036431 GO:0003677
Aip09g01535 410 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 152 402 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01535 159 230 ARID Transcription Factor Family AT3G13350 37.500 7.20e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip09g01535 HMG_box_2 9.3e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01535 - - adu:107465197 498.819