Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01523 ATGGATAATGAGATCGATGTTCCTCCGTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAAGGATCCCGTAACCGTCTCCACCGGCATCACTTACGACAGAGAGAGCATCGAGACATGGCTTTTCTCCGGCAAGAACAAGACCTTCTCCGTAACGAAGCAACAACTCTCTTCTTCTGATTTCTTCGATCTAACTCCAAACCACACTCTTCGCCGATTGATTCAACGCCACGGCGACTTGACGGCGACAATGGGCGAAGAGATGAATGTGGTGGTGGCAGCAAATAGATATAGGGTTTAA 300 0.48 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSGKNKTFSVTKQQLSSSDFFDLTPNHTLRRLIQRHGDLTATMGEEMNVVVAANRYRV 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01523 99 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 82 IPR013083 -
Aip09g01523 99 SUPERFAMILY RING/U-box 4 77 - -
Aip09g01523 99 CDD RING-Ubox_PUB 11 54 IPR045210 -
Aip09g01523 99 PANTHER WDSAM1 PROTEIN 3 86 IPR045185 GO:0061630
Aip09g01523 99 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 86 - -
Aip09g01523 99 Pfam U-box domain 7 76 IPR003613 GO:0004842|GO:0016567
Aip09g01523 99 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Aip09g01523 99 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01523 Aip-Chr9 29351122 29351603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01523 1 87 U-box Gene Family AT2G35930 67.816 4.98e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01523 - - adu:107471540 145.206