Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01470 ATGACAACTCGAATAGCGCCTGGTGTTGGCGCCAACTTGCTTGGCCAACACTCTGCCGAGAGGAATCAGGATGCCACCGCCTATGTCGGCAATCTGGACCCCCAAGTTCCCGAGGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCTGTCGTTAATGTCTATGTTCCCAAGGACAGAGTCACTAACCAACACCAGGGATATGGATTTGTTGAATTCCGTAGCGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTTTACGGCAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGACACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACCGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCGGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTACAAAAAGGACACTAAAGGGGAACGGCATGGCACGCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCCACTGCGCAGAAGAGTAGGCCTCATACGAGATTCGCCAGTGCACCTCCAACACTCGCCAATGTTGCTCAGGCTAATGGTACCGTTGCTGTTCCGGTGCCTCCTCACCCCTTTGCTAATGGAGTTGCTCCACCTCCCATTCCTGCCCTCCGACCACCACCACCCCCACCTCAAGCAGCAGCATTTCAGCCAATGCCAGGAGCTGGGCAACCAGCATGGCATCAACAGCAGCCTGGACTCCCGCCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCTGGTATGCCAATGCCACCCAACAGGAATGGTAAGTCAACCACCTGTTTGGCGACCACAACCACCGCCACCGCAGCAACAGGGTGGACGACCTATGGCATATCCTCAACCCTCAATGCCTCCACCGCCTTCCTATAG 1059 0.5109 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVAVPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSGMPMPPNRNGKSTTCLATTTTATAATGWTTYGISSTLNASTAFL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01470 352 MobiDBLite consensus disorder prediction 193 224 - -
Aip09g01470 352 Gene3D - 112 200 IPR012677 -
Aip09g01470 352 CDD RRM2_SF3B4 111 193 IPR034159 -
Aip09g01470 352 CDD RRM1_SF3B4 28 100 IPR034158 -
Aip09g01470 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Aip09g01470 352 MobiDBLite consensus disorder prediction 253 273 - -
Aip09g01470 352 PANTHER TRANSFORMER-2-RELATED 1 323 - -
Aip09g01470 352 MobiDBLite consensus disorder prediction 253 320 - -
Aip09g01470 352 SMART rrm1_1 26 99 IPR000504 GO:0003723
Aip09g01470 352 SMART rrm1_1 113 187 IPR000504 GO:0003723
Aip09g01470 352 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Aip09g01470 352 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 323 - -
Aip09g01470 352 Gene3D - 16 111 IPR012677 -
Aip09g01470 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Aip09g01470 352 MobiDBLite consensus disorder prediction 208 224 - -
Aip09g01470 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Aip09g01470 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Aip09g01470 352 MobiDBLite consensus disorder prediction 289 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01470 Aip-Chr9 26999664 27003526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01470 18 267 Eukaryotic Initiation Factors Gene Family AT4G34110 27.037 2.00e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01470 K12831 - gmx:100792707 504.212