Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01466 ATGCCTCTGTATGAGTTATACCGGCTTTCTAGAGAGAAGCTTGATGAAGAGATTAATGGCACACGTGCAACTGATCAGTCTCAATCTTCCTCGCCTGAGAAGGATTTTTTCGAGCTAATTTGGGAAAACGGCAACATTTTGACGACGCAGGGTCAGTCTAGTAGAGCTAAGAAGAGTCCACCTCGCCGGAGCTTACCGTCTCACTGCTTGCCATCTCACAGTCCCAAGGGTAGAGACAGAGATGCAGGGTATGTTAACAATTCAAGGGTAGGGAAGTCTGGTGATTTAGACACCGGATTGAATGAAATTTCGATGTCAGTGCCGTCGACTGAAGTGGATTTGGGTCATGATGATGATGTCATACCTTGGTTGGATTATACAATGGATGGCTCTTTGCAGAATGAGTATGGTTCTAATTTCTTACATGAACTATCCGGGGTCACGGATCAAGACTTGCCCTCAAATCATTTTTCGCTTGTGGATAAAAGTAGTGGTAATCAGGTATTTAGGGACTCTCATAAAAATTCTGCAGAGCAAAGCAACTTTTCCAGTGTTTCTTCGACCGGCGTAGATGAGACAACTAGACCTAAAGCTAGCACGGTTGAATCATACCTGCCATCATCATTCATTTCAGTTAGACCAAGAGTATCGGGTGTTACTGCGAACGATACCAGTAATGCAATGCTTCATCCACCAGTTACCGAGATTCCTTCTTCATCGAGTGATTTTTCGAGCTTAAAGATGCAGAAGCAAGATCAAGTTATTCCTAGCAATGGTTCATCTGTTATGAATTTCTCCCATTTTGCAAGGCCTGCCGCCATCGTGAGAGCTAATCTTCAGAACATTGGATTGAAGTCTGTTTCGTCTTCAACAAGATCTGAAAATGTGGAAAGTATGAATAAAGGTGCTGTTGTACCTAGCAGTAATCTTCCAGAATCAACTCTTGCCGATTCATGTAGTGAATGTCCAAAGGTTCTAATGGGGAACAATGAGAAGGCTGTGGAACAATCCAGGGATGATTTGAAACTGTTGGAGTCAAAATCTCTCGAACAGAACATTGCCGGTTCTAAACAATTAGACCCTACTTGCAAAGAGAAAGCCATTAAAATTGATCAAACTTCCAACCGAGCTCTTGGTGAAACTGCCACTAACACACAGATAGCTGTTGAAAGAAGTACGGAGCTGGTGGTAGCCTCTTCCTCTGTTGGCTCTGGCAACTGTGCAGACAGAGGTTCAGACGATCCAATTCAAAATTTGAAGCGGAAAAATCGAGACACTGAGGACTCTGAATGGCATAGTGATGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAAGCAGCTGCTGGGCGTGGAGCTTCGGGTTCCAAGAGAAGTCGTGCTGCTGAAGTGCATAATCTTTCTGAAAGGAGGCGAAGAGATAGGATCAACGAGAAGATGCGTGCATTACAAGAACTCATACCCAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCTATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCCGGTTTATATATGCATCCGATGATGTTGCCACATGGAATGCAGCACATGCATGCACCACACTTGGCTCCTTTTTCGCCTATGGCCTATGGAATGCAAATGGGATTGGGTATGGGATATGGCATGGCTATGCCTGATATGAATGGTGTATCATCTCGATTCCCAATGGTTCAGGTTCCCCAAATGCAAGGAACTCATGTCCCTGTTGCACAAATGTCTGGAGCTACTGCAATGGTTAGATCAAATACTCAAGGGTTCGGGGTTCCAGGTCAGGGATTTCCCTTGCCACTCCCTCGTGCACCCTTATTTCCTTTCTCGGGAGGGCCGGTTATGAACTCATCGTCGGCTTTGGGATTACGTCCTTGTGGAGCAACAGGGCTTAGTCAAACTGCGGATCTGGCGTCAACATCTGGCTTAAAGGACCCTTCGCCAAATACGGATTCACTAGTTAAGCAAAGTACTGGTGGTGGCGGCTGCGACTCAACTAGTCAGATGCCTACCCAGTGTGAAGCAGCACCAACTGTTGGATTTGAACAGTCACCAATGGTACATAATAGCAGCCATACCTCTGAGGCTAATGACAGTGGAACTCTTAATCCTGACAAAGAAGATAATAACCTTGTGACTGGTTATGATGATTGA 2196 0.4476 MPLYELYRLSREKLDEEINGTRATDQSQSSSPEKDFFELIWENGNILTTQGQSSRAKKSPPRRSLPSHCLPSHSPKGRDRDAGYVNNSRVGKSGDLDTGLNEISMSVPSTEVDLGHDDDVIPWLDYTMDGSLQNEYGSNFLHELSGVTDQDLPSNHFSLVDKSSGNQVFRDSHKNSAEQSNFSSVSSTGVDETTRPKASTVESYLPSSFISVRPRVSGVTANDTSNAMLHPPVTEIPSSSSDFSSLKMQKQDQVIPSNGSSVMNFSHFARPAAIVRANLQNIGLKSVSSSTRSENVESMNKGAVVPSSNLPESTLADSCSECPKVLMGNNEKAVEQSRDDLKLLESKSLEQNIAGSKQLDPTCKEKAIKIDQTSNRALGETATNTQIAVERSTELVVASSSVGSGNCADRGSDDPIQNLKRKNRDTEDSEWHSDDVEEESVGVKKAAAGRGASGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMHPMMLPHGMQHMHAPHLAPFSPMAYGMQMGLGMGYGMAMPDMNGVSSRFPMVQVPQMQGTHVPVAQMSGATAMVRSNTQGFGVPGQGFPLPLPRAPLFPFSGGPVMNSSSALGLRPCGATGLSQTADLASTSGLKDPSPNTDSLVKQSTGGGGCDSTSQMPTQCEAAPTVGFEQSPMVHNSSHTSEANDSGTLNPDKEDNNLVTGYDD 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01466 731 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Aip09g01466 731 Gene3D - 454 517 IPR036638 GO:0046983
Aip09g01466 731 MobiDBLite consensus disorder prediction 47 97 - -
Aip09g01466 731 CDD bHLH_AtPIF_like 459 521 - -
Aip09g01466 731 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Aip09g01466 731 MobiDBLite consensus disorder prediction 168 194 - -
Aip09g01466 731 MobiDBLite consensus disorder prediction 651 731 - -
Aip09g01466 731 PANTHER TRANSCRIPTION FACTOR PIF3 1 675 IPR044273 GO:0003700|GO:0006355
Aip09g01466 731 SMART finulus 465 514 IPR011598 GO:0046983
Aip09g01466 731 MobiDBLite consensus disorder prediction 16 35 - -
Aip09g01466 731 MobiDBLite consensus disorder prediction 400 467 - -
Aip09g01466 731 MobiDBLite consensus disorder prediction 223 242 - -
Aip09g01466 731 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 520 IPR036638 GO:0046983
Aip09g01466 731 PANTHER TRANSCRIPTION FACTOR PIF3 1 675 - -
Aip09g01466 731 MobiDBLite consensus disorder prediction 651 722 - -
Aip09g01466 731 MobiDBLite consensus disorder prediction 414 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01466 Aip-Chr9 26861334 26865600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01466 1 605 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.887 6.04e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip09g01466 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01466 K12126 - gmx:100794974 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01466 09 26861334 26865600 Aip09g01466 09 26861334 26865600 ECH