Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01442 ATGTCATCCTCAAGGCCTAGCCAATCTTCTAGCAATTCGGGGAGATCAAGACATAGCGCTAGGATTATTGCTCAGACCACTGTAGATGCAAAGCTCCATGCTAGTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCTAGTTCGGTGCGCGCCTCCGGCTCAGCTGATGGAGAAAATCAACCAAGAACAGATAAAGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAGATGATTCAGCCCTTTGGGTGCTTGCTGGCCTTGGATGAGAAAACATGCAAGGTGATTGCTTACAGTGAGAATGCACCAGAGATGCTGACCATGGCGAGTCATGCTGTTCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACCGACATAAGAACTATTTTCACTGCTCCAAGTGCTTCGGCATTGCAGAAAGCACTAGGATTTGGAGAAGTTCATCTTCTTAACCCCATCCTAGTTCATTGCAAGACTTCTGGGAAACCCTTCTATGCTATTCTCCATCGTGTTACTGGTAGTTTGATTATTGACTTTGAGCCCGTCAAGCCTTATGAAGTTCCTATGACTGCAGCAGGTGCTCTGCAATCCTACAAGCTTGCTGCGAAAGCAATCACCCGATTGCAGTCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATACAATGGTTCAAGAAGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGTTAACAAAGCCAGGACTTGAACCATATCTTGGTTTGCACTATCCGTCCACTGATATTCCCCAGGCTGCACGTTTTTTGTTCTTGAAGAACAAGGTCCGTATGATTGTTGATTGTCATGCAAAACATGTAAAGGTTGTTCAAGATGAGAAGCTGCCATTCGATTTGACTTTGTGTGGTTCAACCTTAAGAGCTCCTCATAGTTGCCATTTGCAATACATGTCAAACATGGATTCAATTGCTTCCCTAGTTATGGCAGTTATAGTCAATGACAGCGATGAAGATGCGGACAACTCTGATGCTGTTCAGCCACAAAAGAGAAAGCGACTCTGGGGCTTAGTTGTTTGTCATAACACTACTCCCAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTGACACAAGTATTTGCCATCCATGTCAACAGAGAAATAGAGTTAGAATATCAGATTACTGAAAAGAATATCCTTCGCACTCAGACGCTCTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGAATTGTATCACAAAGCCCTAATATAATGGACCTAGTTAAATGTGATGGGGCTTCCCTCTTGTATAAAAACAAGGTATGGAGATTAGGAGTAACACCTACTGAATCTCATATAAGAGAGATAGCTTTGTGGTTGTCTGAGCACCATATGGATTCCACAGGTCTTAGTACAGATAGCTTGTATGATGCCGGGTTCCCAGGGGCTCTGTCTCTTGGTGATGTAGTATGTGGAATGGCAGCGGTTAGAATAACTGAGAAAGACATAGTTTTCTGGTTTCGATCACACACAGCTGCAGAAATCAGATGGGGCGGTGCAAAGCATGACCCTGGTGAAAAGGACGACGGCAGGAGGATGCATCCACGGTCATCTTTCAAGGCTTTCCTTGAAGTTGTTAAGTCAAGGAGCTTACCGTGGAAAGACTACGAGATGGATGCTATTCATTCATTGCAGCTAATACTCAGAAATGCATTCAAAGAGATGGATAGTATGGACATAACCACAAATGCAATAAATACAAGGCTGAATGATTTGAGGATTGAAGGGATGCAGGAACTGGAAGCCGTGACGAGTGAGATGGTTAGATTAATTGAAACTGCAACAGTACCTATTCTGGCTGTAGATGTTGATGGGCTGGTTAATGGATGGAATATAAAGATTGCCGAATTGACTGGCCTTTCGGTTGGTGATGCTATAGGGAAGCATCTTCTCACGCTCATTGAGAACTCTTCAGTTGGTATAGTCAAGAAGATGCTTGAGATGGCATTGAAAGGTGAAGAAGAGAAAAACGTCCAATTTGAGATCAAAACACATGGGTCTAAAGTTGATTGTGGTCCTATTAGATTGGTAGTTAATGCTTGCGCAAGCCGGGATATTCATGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGACATCACAGCTCAGAAGACTGTCATGGATAAATTTACCCGAATTGAAGGTGATTACAAGGCGATTGTACAGAATCCCAACCCATTGATCCCCCCAATATTTGGAACTGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGACAAAGGTGACCGGATGGAAGAGAGAAGAGGTGATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACTCAGATGGCTTGTTGTCGTCTTAAGAACCAAGAAGCTTTTGTTAATTTTGGTATTGTACTTAATAAAGCCATGACCGGTTTGGAGACAGCAAAGGTTGCTTTTGGTTTCTTTGCTCGTAGTGGGAAGTATGTAGAATGCCTGCTTTCGGTGAGTAAAAAATTGGACGTCGAAGGTGTAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGCTGCAACAAGCATTGCATGTTCAGCGAATATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACTTATATGAAGAGGCAGATCAGGAATCCTTTATCCGGGATGATGTTTTCGCGGAAAATGTTGGAGGCCACTGAGTTGGGAACGGAACAAAAGCAACTCCTACACACCAGTGCTCAGTGCCAGTGCCAGCTTAGCAAAGTTCTTGATGACTCAGATCTTGACAGCATCATTGATGGTTACTTGGATCTTGAGATGGCTGAATTCACTCTGCATGATGTATTGGTTGCTTCCCTTAGTCAAGTAATGGCAAAGAGTAACACCAAAGCTATCCGAATAGTCAACGATGTCAAAGAGCAAATTGTGACAGAAACCTTATACGGTGATAGTCTTAGGCTTCAGCAGGCCATAGCTGACTTCTTATTGATTTCCATAAACTTCACACCCAATGGAGGTCAAGTTGTAGTAACAGCCACTCTGACCAAAGAACAAATAGGGCAATCTGTCCATCTTGTTAATTTGGAGCTCAGCATAACACATCCTGGTAGTGGGGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAAGGTATAAGCCTTCTCATAAGCAGAAAACTTCTAAAGCTGATGAATGGAGATGTGCGTTATGTAAGGGAAGCAGGCAAATCATCTTTTATCCTATCTGCTGAACTTGCCGCAGCTCATAAGTTGAAAGATTAG 3393 0.4271 MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHASFEESGSSFDYSSSVRASGSADGENQPRTDKVTTAYLHHIQKGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMASHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVHLLNPILVHCKTSGKPFYAILHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAELTKPGLEPYLGLHYPSTDIPQAARFLFLKNKVRMIVDCHAKHVKVVQDEKLPFDLTLCGSTLRAPHSCHLQYMSNMDSIASLVMAVIVNDSDEDADNSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLTQVFAIHVNREIELEYQITEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGASLLYKNKVWRLGVTPTESHIREIALWLSEHHMDSTGLSTDSLYDAGFPGALSLGDVVCGMAAVRITEKDIVFWFRSHTAAEIRWGGAKHDPGEKDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKEMDSMDITTNAINTRLNDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLSVGDAIGKHLLTLIENSSVGIVKKMLEMALKGEEEKNVQFEIKTHGSKVDCGPIRLVVNACASRDIHDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNAAMTKVTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGLETAKVAFGFFARSGKYVECLLSVSKKLDVEGVVTGVFCFLQLASPELQQALHVQRISEQTALKRLKALTYMKRQIRNPLSGMMFSRKMLEATELGTEQKQLLHTSAQCQCQLSKVLDDSDLDSIIDGYLDLEMAEFTLHDVLVASLSQVMAKSNTKAIRIVNDVKEQIVTETLYGDSLRLQQAIADFLLISINFTPNGGQVVVTATLTKEQIGQSVHLVNLELSITHPGSGVXXXXXXXXXXXXXXXXXXXXXXXEGISLLISRKLLKLMNGDVRYVREAGKSSFILSAELAAAHKLKD 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01442 1130 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Aip09g01442 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Aip09g01442 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Aip09g01442 1130 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
Aip09g01442 1130 MobiDBLite consensus disorder prediction 1 23 - -
Aip09g01442 1130 CDD PAS 761 872 IPR000014 -
Aip09g01442 1130 Gene3D - 199 562 IPR029016 -
Aip09g01442 1130 ProSiteProfiles Histidine kinase domain profile. 901 1124 IPR005467 -
Aip09g01442 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Aip09g01442 1130 MobiDBLite consensus disorder prediction 1 26 - -
Aip09g01442 1130 Gene3D PAS domain 74 321 - -
Aip09g01442 1130 SMART gaf_1 218 411 IPR003018 GO:0005515
Aip09g01442 1130 CDD PAS 628 734 IPR000014 -
Aip09g01442 1130 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1125 - -
Aip09g01442 1130 Gene3D PAS domain 763 875 - -
Aip09g01442 1130 PIRSF Phytochrome_conventional 1 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Aip09g01442 1130 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
Aip09g01442 1130 SUPERFAMILY GAF domain-like 409 588 - -
Aip09g01442 1130 Gene3D - 406 579 IPR043150 -
Aip09g01442 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1120 IPR003594 -
Aip09g01442 1130 Pfam PAS fold 69 185 IPR013654 GO:0006355
Aip09g01442 1130 SMART pas_2 619 685 IPR000014 -
Aip09g01442 1130 SMART pas_2 749 818 IPR000014 -
Aip09g01442 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Aip09g01442 1130 Pfam GAF domain 218 401 IPR003018 GO:0005515
Aip09g01442 1130 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Aip09g01442 1130 SMART HisKA_10 894 959 IPR003661 GO:0000155|GO:0007165
Aip09g01442 1130 PANTHER PHYTOCHROME A 1 1125 - -
Aip09g01442 1130 Pfam PAS fold 620 734 IPR013767 GO:0006355
Aip09g01442 1130 Pfam PAS fold 750 872 IPR013767 GO:0006355
Aip09g01442 1130 Coils Coil 1063 1063 - -
Aip09g01442 1130 Gene3D PAS domain 611 748 - -
Aip09g01442 1130 Gene3D - 957 1126 IPR036890 -
Aip09g01442 1130 SUPERFAMILY GAF domain-like 198 399 - -
Aip09g01442 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1115 IPR036890 -
Aip09g01442 1130 Coils Coil 1087 1087 - -
Aip09g01442 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Aip09g01442 1130 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01442 Aip-Chr9 25961227 25967559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01442 1 1127 Histidine Kinase Gene Family AT1G09570 78.457 0.0 1871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01442 K12120 - gmx:100790763 1901.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01442 09 25961227 25967559 Aip09g01442 09 25961227 25967559 ECH
Aip06g00822 06 11095330 11099546 Aip09g01442 09 25961227 25967559 PCT