Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01436 ATGGTTTCCGTTATTGGCGTTTCTTCAATATACCAAACCCACGCTCTCGAACTCCACAAGAGAGCAACGTCCACAACAACAACAACAGCTTCGGGTTCTTCCAACGCCGTTTCGCTCCCTTCGTTGTCGTTTGACAACAAGTCGCACTTCAACGCCGTTCTCAGAGCTCATTATCACCTTAACGACGGCAATAGGCGCAGGCTCGGTTTTGTTCCTACTTCTAATGCAGTTGTGACAGCTAATGACTCTTCCGTACTCAGCGAAGAAGCCTTCAAGGGTTTTGGTTTTGACGGTGTTGGCGATGATGATGAAATTGGTTATGAGTATGAGAGTGACGGTGACGCTCATTTTATTGCTTCAAGAGAAGATGAGCTCGATATTTCGAAGCTTGGCTTGCCTTCGAGGGTCGTCGACTCGCTCCAGAAACGTGGAATCACTAGCCTTTTCCCAATTCAGAGAGCTGTGTTAGTGCCTGCCTTAGAAGGTAGAGATATCATTGCCCGGGCAAAGACTGGGACAGGGAAGACATTGGCGTTTGGGATTCCCATTATTAAAGGCCTCACTGATGATGAGCAAGGTTCCTTCAGGCGTTCGGGCCGTCTTCCTAAAGTATTGGTCCTTGCACCTACTAGGGAGTTAGCGAAGCAGGTCGAGAAGGAGATAAAAGAATCTGCGCCTTATCTGAATACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAAAGTGCTCTTTCACGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTAATAAATGGGAACAGCCTTAAATTGAGTGAAGTTCAATATTTGGTTCTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGGTCCCATCTGAGCGGCAGACAATGCTTTTCTCTGCGACAATGCCGGGTTGGGTGAAGAAATTATCAAGAAAATATCTGAACAATCCGTTGACAATTGATTTGGTCGGTGATGAAGAAGAAAAGCTTGCTAATGGGATCAAACTTTATGCTATGTCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACTGTCTATGCAAAGGGTGGAAAGACTATTGTTTTCACACAGACAAAAAGGGATGCCGATGAAGTATCACTGTCATTAACAAATAGTATAGCTTCTGAAGCTCTGCATGGTGATATATCTCAGCATCAAAGAGAAAGAACATTGAATGGCTTTCGGCAAGGGAAGTTCACTGTTCTTGTTGCCACGGATGTTGCAGCCCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTACGAACTTCCTAATGACCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAAGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTTGGCTGTAAATTTGAATTTGTTAGTCCACCAGCTATCGGAGAGATTTTGGAGGCATCTGCTGCACAAGTTGTTGCTACGCTTGAGAGAGTTCATCCAGAGTCTGTTGAGTTCTTCACTGCAACTGCACAAAAATTGGTTGAAAAACAAGGGGTTAGTGCCCTCGCAGCTGCACTAGCACAGCTCAGTGGATTCTGTAGACCTCCATCATCCCGTTCATTAATCAACCATGAGCAGGGATGGGTTACATTGCAACTCACTCGAGATGGAGATAATTCTAGAAGATTTCTTTCTGCAAGATCGGTCACTGGGTTTCTTTCTGATGTGTATTCTCCTGCTGCTGATGAAGTTGGAAAAATACATGTAATTGCAGATGACCGGATTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTCAACAAGGATTTGCCACCTGGAAACACTATTTCCAGGATCACCAAGTTACCTGCTTTGCAAGATGATGGACCTGCAAATGATTACTACGGGAAGTTTTCCGACAGAGAACGAAGTAACCGAAGAGGTTCAAGGGATCAGAGAAGTTTTAAAACCTCACGAGGATATGGGGGAAACCGAGGCTCTGACGATGATTTTGGTAGTTCATACGGGAGAGGGAGTAAAAGTTTTAAATCTGGCAACAGCCGGTCTCGAATGGGAAAAAGCAGTGATGACTGGCTGATTGGAGGTAGACAATCAAGCAGGGGTGGTAGCTATGGAGGGGCCTGTTTTAATTGCGGAGAATCGGGGCATCGGGCATCAGATTGTCCCAATAAGCGAAGCTTCTTTTAG 2289 0.4495 MVSVIGVSSIYQTHALELHKRATSTTTTTASGSSNAVSLPSLSFDNKSHFNAVLRAHYHLNDGNRRRLGFVPTSNAVVTANDSSVLSEEAFKGFGFDGVGDDDEIGYEYESDGDAHFIASREDELDISKLGLPSRVVDSLQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTDDEQGSFRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKVPSERQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLANGIKLYAMSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAIGEILEASAAQVVATLERVHPESVEFFTATAQKLVEKQGVSALAAALAQLSGFCRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHVIADDRIQGAVFDLPEDIAKELLNKDLPPGNTISRITKLPALQDDGPANDYYGKFSDRERSNRRGSRDQRSFKTSRGYGGNRGSDDDFGSSYGRGSKSFKSGNSRSRMGKSSDDWLIGGRQSSRGGSYGGACFNCGESGHRASDCPNKRSFF 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01436 762 Gene3D - 349 551 IPR027417 -
Aip09g01436 762 Gene3D - 126 336 IPR027417 -
Aip09g01436 762 Pfam DEAD/DEAH box helicase 149 321 IPR011545 GO:0003676|GO:0005524
Aip09g01436 762 CDD SF2_C_DEAD 358 475 - -
Aip09g01436 762 Gene3D - 729 760 - -
Aip09g01436 762 PANTHER - 41 753 - -
Aip09g01436 762 CDD GUCT_Hera 560 640 - -
Aip09g01436 762 Pfam Zinc knuckle 741 757 IPR001878 GO:0003676|GO:0008270
Aip09g01436 762 SMART ultradead3 144 349 IPR014001 -
Aip09g01436 762 Pfam Helicase conserved C-terminal domain 358 466 IPR001650 -
Aip09g01436 762 Pfam GUCT (NUC152) domain 554 653 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aip09g01436 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 487 IPR027417 -
Aip09g01436 762 MobiDBLite consensus disorder prediction 704 720 - -
Aip09g01436 762 ProSiteProfiles Zinc finger CCHC-type profile. 742 757 IPR001878 GO:0003676|GO:0008270
Aip09g01436 762 CDD DEADc 136 333 - -
Aip09g01436 762 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 41 753 - -
Aip09g01436 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 506 IPR001650 -
Aip09g01436 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Aip09g01436 762 MobiDBLite consensus disorder prediction 661 681 - -
Aip09g01436 762 SUPERFAMILY Retrovirus zinc finger-like domains 729 760 IPR036875 GO:0003676|GO:0008270
Aip09g01436 762 SMART helicmild6 386 466 IPR001650 -
Aip09g01436 762 SMART c2hcfinal6 741 757 IPR001878 GO:0003676|GO:0008270
Aip09g01436 762 MobiDBLite consensus disorder prediction 646 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01436 Aip-Chr9 25640075 25647034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01436 151 488 Eukaryotic Initiation Factors Gene Family AT1G72730 38.150 2.06e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01436 - - vra:106757668 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00815 06 11023991 11029094 Aip09g01436 09 25640075 25647034 ECH
Aip09g01436 09 25640075 25647034 Aip09g01436 09 25640075 25647034 ECH