Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01414 ATGAGAAGGCACTCTTGCTGTTACAATCAGAAGCTTCGAAAGGGTCTGTGGTCACCTGAGGAGGATGAGAAACTTCTCATGCATATTACTAAGTATGGTCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGACTTAGGTGGATAAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCACAAGAAGAAGAGAATCTCATCATTGAGCTTCATGGAGTATTGGGCAATAGATGGTCGCAAATTGCGGCACAATTGCCGGGGAGGACCGACAATGAGATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAGCTGAGGCAGAGAGGTATAGACCCTGTGACACACAAGAAGATTCCGGAGGCCGAGAAAGGCAGCGGCGGCGAGGACAACGACAACAGAAACCAAGAAAAGACAGCAGAAGCATCGTCCAATGAGTTGAACAAATCAGATGATGCAACTCCCTATGTGCAAAACAGAGCATCTTCAATGAGTTGCCATCATCACTCAGATTTCATGGGTGGTTTTCCAATTCAGATGATAAATCATGCATCATCATCATCAGATTCAAATTCAGTTAATTGGTATAGCCACAGTAGTGGAAGGTCTTTTGATATCAACACTGATTTTCCATTCAATACCACTTCTATTCTTACACCAACAACCGCAACCAATTTATTTCTTCCTACTGATTCTAGTTTCCTTTACAAGCCTTCTTTCTCTTCTTCTTCGAACTCTCCTGAAAATATCTCTAATACTGCACCCTATGGATTGAAAGAGGAACAATACCAAATTCACATGAGCATAGAAGAGTTAGAAGAATTATCATCCAAGTGGGATGAGTATTATTACTACCTTCATAACCCAGTCTCAATGCTTGCTTCTTCTGAATCATTTTGCAATGAAATCAAGCCAGATATACACCATTTGGTACCTGATACACCAGGGCCCATTATGTTACCTCACCATAATAATAATAATACCAAGTTCCAAGAACCATCTCAAATGGCAAGTTTCTTTTCAAAGGACATTCAGAAGCTCACAGCAGCTTTTGGACATATATAA 1095 0.4091 MRRHSCCYNQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHGVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKKIPEAEKGSGGEDNDNRNQEKTAEASSNELNKSDDATPYVQNRASSMSCHHHSDFMGGFPIQMINHASSSSDSNSVNWYSHSSGRSFDINTDFPFNTTSILTPTTATNLFLPTDSSFLYKPSFSSSSNSPENISNTAPYGLKEEQYQIHMSIEELEELSSKWDEYYYYLHNPVSMLASSESFCNEIKPDIHHLVPDTPGPIMLPHHNNNNTKFQEPSQMASFFSKDIQKLTAAFGHI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01414 364 MobiDBLite consensus disorder prediction 122 149 - -
Aip09g01414 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip09g01414 364 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip09g01414 364 Gene3D - 69 160 - -
Aip09g01414 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip09g01414 364 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aip09g01414 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip09g01414 364 CDD SANT 17 61 IPR001005 -
Aip09g01414 364 SMART sant 66 114 IPR001005 -
Aip09g01414 364 SMART sant 13 63 IPR001005 -
Aip09g01414 364 PANTHER MYB DOMAIN PROTEIN 55 1 264 - -
Aip09g01414 364 Gene3D - 14 66 - -
Aip09g01414 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip09g01414 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip09g01414 364 MobiDBLite consensus disorder prediction 122 163 - -
Aip09g01414 364 CDD SANT 69 109 IPR001005 -
Aip09g01414 364 PANTHER MYB DOMAIN PROTEIN 55 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01414 Aip-Chr9 25022975 25025003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01414 1 152 MYB Transcription Factor Family AT4G01680 82.237 5.66e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g01414 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01414 K09422 - gmx:100782199 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01414 09 25022975 25025003 Aip06g00795 06 10533706 10535060 ECH
Aip09g01414 09 25022975 25025003 Aip09g01414 09 25022975 25025003 ECH
Aip06g00795 06 10533706 10535060 Aip09g01414 09 25022975 25025003 PCT