Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01408 ATGACAAGAAAGAAGGTGAAGTTGGCTTACATTCCTGATGACTCAGCAAGAAAAGCAACATTCAAGAAAAGGAAGAGGGGAATTCTGAAGAAGGTGAATGAACTCAGCATTCTATGCGGCATTGAAGCTTGTGCTATAATCTCGAACCCTTTCGAATCTGAAGAAGCAGAGGTTTGGCCAGATCCAGAGAGGGCGAAAGAAGTGATTGAGAAGTACAGTAATTCATCTGTGATTGACGAAAGTAAGAACATGAATCAAGAAAGCTTCATGCTGCAGAGAATCGCTAAAGCGAAGGAGTTGCTGAAGAAGAAGCGTAAGGAGAATCGTGAAAAGGAGATGCTTCTTTCTATGTATAAGTACATGAAAAGTGATCAAGAACTACCGGATAACATGACTGTTGCGGATTTGAAACAACTTGATAATCTCATTGATCAGAGCATGAAGGACATTGAAATTAAGATGGTTCTTGAAGATGAAGATGATGATGAATAG 492 0.3963 MTRKKVKLAYIPDDSARKATFKKRKRGILKKVNELSILCGIEACAIISNPFESEEAEVWPDPERAKEVIEKYSNSSVIDESKNMNQESFMLQRIAKAKELLKKKRKENREKEMLLSMYKYMKSDQELPDNMTVADLKQLDNLIDQSMKDIEIKMVLEDEDDDE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01408 163 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Aip09g01408 163 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Aip09g01408 163 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Aip09g01408 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip09g01408 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip09g01408 163 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Aip09g01408 163 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Aip09g01408 163 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip09g01408 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Aip09g01408 163 Coils Coil 91 117 - -
Aip09g01408 163 PANTHER MADS BOX PROTEIN 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01408 Aip-Chr9 24866259 24866756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01408 1 150 Type I MADS-box Gene Family AT5G48670 48.344 3.15e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip09g01408 SRF-TF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01408 - - gmx:100792290 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01408 09 24866259 24866756 Aip09g01408 09 24866259 24866756 ECH