LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g01405	ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCGTTTACGGAAATGATTGTTTCTTGGAGCAAGTTATGGTAAAAGAAGGATCATCATCAAGTACAAGTAATAGTATCATAACAACAAAGAAGAAAGAAGAAAAAGATAATAATAAACACGAAGCGGCGGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCATCAACAACTACTTTCAAGAAACTAAGAATAGCAGACTCATCATTGTTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTTTCCACTTTTTTAAGACCTTCAATGCTTCGTCAGAATAGTTCTGTTTCACGTGATGCTGATAACAACAAAGAAGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGCAATAATAATAAGAGGAAAGTGGTGGATACCGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAACACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTCAAGCGAGAATGATGAAGACATAGAAGATGTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGGGAAAGAAATAAATTAAAGCAAAAGAATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAGTTAATGGGTATGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATGGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTTATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAAGGTTAATAATCTTTGTACACAACCGCCACTACTTCAGACAACCAATAATATCTCAGCTCTAAAGTAG	1089	0.3774	MAEKKLELFRAGMNPTSVYGNDCFLEQVMVKEGSSSSTSNSIITTKKKEEKDNNKHEAAAASQFSYTSLYNSSSSASTTTFKKLRIADSSLLNQQDFAAGKLMNFSTFLRPSMLRQNSSVSRDADNNKEEPFPEKQLKSVSNNNKRKVVDTGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYSSENDEDIEDVXXXXXXXXXXERERNKLKQKNLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQLMGMRPGINIPCNMAQFNGIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTTHPMLGNNNNKVNNLCTQPPLLQTTNNISALK	362

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip09g01405	362	Coils	Coil	210	219	-	-
Aip09g01405	362	SMART	finulus	209	250	IPR011598	GO:0046983
Aip09g01405	362	PANTHER	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	140	346	-	-
Aip09g01405	362	Gene3D	-	210	245	IPR036638	GO:0046983
Aip09g01405	362	MobiDBLite	consensus disorder prediction	323	342	-	-
Aip09g01405	362	Coils	Coil	192	199	-	-
Aip09g01405	362	PANTHER	TRANSCRIPTION FACTOR PIF3	140	346	IPR044273	GO:0003700\|GO:0006355
Aip09g01405	362	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	210	266	IPR036638	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g01405	Aip-Chr9	24754822	24757309	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g01405	211	264	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09530	54.237	5.33e-15	74.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g01405	K12126		-	gmx:100818543	152.91

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g00792	06	10480444	10482633	Aip09g01405	09	24754822	24757309	PCT

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