Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01405 ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCGTTTACGGAAATGATTGTTTCTTGGAGCAAGTTATGGTAAAAGAAGGATCATCATCAAGTACAAGTAATAGTATCATAACAACAAAGAAGAAAGAAGAAAAAGATAATAATAAACACGAAGCGGCGGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCATCAACAACTACTTTCAAGAAACTAAGAATAGCAGACTCATCATTGTTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTTTCCACTTTTTTAAGACCTTCAATGCTTCGTCAGAATAGTTCTGTTTCACGTGATGCTGATAACAACAAAGAAGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGCAATAATAATAAGAGGAAAGTGGTGGATACCGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAACACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTCAAGCGAGAATGATGAAGACATAGAAGATGTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGGGAAAGAAATAAATTAAAGCAAAAGAATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAGTTAATGGGTATGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATGGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTTATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAAGGTTAATAATCTTTGTACACAACCGCCACTACTTCAGACAACCAATAATATCTCAGCTCTAAAGTAG 1089 0.3774 MAEKKLELFRAGMNPTSVYGNDCFLEQVMVKEGSSSSTSNSIITTKKKEEKDNNKHEAAAASQFSYTSLYNSSSSASTTTFKKLRIADSSLLNQQDFAAGKLMNFSTFLRPSMLRQNSSVSRDADNNKEEPFPEKQLKSVSNNNKRKVVDTGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYSSENDEDIEDVXXXXXXXXXXERERNKLKQKNLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQLMGMRPGINIPCNMAQFNGIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTTHPMLGNNNNKVNNLCTQPPLLQTTNNISALK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01405 362 Coils Coil 210 219 - -
Aip09g01405 362 SMART finulus 209 250 IPR011598 GO:0046983
Aip09g01405 362 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 140 346 - -
Aip09g01405 362 Gene3D - 210 245 IPR036638 GO:0046983
Aip09g01405 362 MobiDBLite consensus disorder prediction 323 342 - -
Aip09g01405 362 Coils Coil 192 199 - -
Aip09g01405 362 PANTHER TRANSCRIPTION FACTOR PIF3 140 346 IPR044273 GO:0003700|GO:0006355
Aip09g01405 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 266 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01405 Aip-Chr9 24754822 24757309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01405 211 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 54.237 5.33e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01405 K12126 - gmx:100818543 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00792 06 10480444 10482633 Aip09g01405 09 24754822 24757309 PCT