Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01399 ATGGGTAAAAGAGGGTCTTCCTGTTCCTCTTCCTCTTCATCTTTCAGCCCTTCTTTCTCAACTGCTTCTTCACATCTTCATGATGATCTTAGTCTTGGACTCAGCATTTCTTCCACTCATCATCAACATCTTCCTTCCTCTATCTCAAGGGGGCAGTGGCAAATCCAATCATCATCACTTGCAAGTACTTCACAAGGTGCTGAATTGGCAAATGATTGCAGTGACCATAACACGTTCTTTGTCAAAGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAACCTTTTAGTTCATGATGGTTACCATGAATTGGTTAAAGCTCTTGAACAAATGTTTGACACTACCATATTCTGGGGAACTGAGTTAGATGCAGTGCAAGCAGAGAGGTGCCATGTTCTAACTTATGAGGATGGAGAAGGGGACTTGATTATGGTTGGAGATGTGCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACCAGGGTTGACACATTTGGATGTTGA 516 0.4225 MGKRGSSCSSSSSSFSPSFSTASSHLHDDLSLGLSISSTHHQHLPSSISRGQWQIQSSSLASTSQGAELANDCSDHNTFFVKVYMEGIPIGRKLNLLVHDGYHELVKALEQMFDTTIFWGTELDAVQAERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVDTFGC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01399 171 Pfam AUX/IAA family 65 165 IPR033389 -
Aip09g01399 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 170 IPR003311 GO:0005634|GO:0006355
Aip09g01399 171 Gene3D - 72 170 - -
Aip09g01399 171 ProSiteProfiles PB1 domain profile. 78 168 IPR000270 GO:0005515
Aip09g01399 171 PANTHER AUXIN-INDUCED PROTEIN 5 170 - -
Aip09g01399 171 SUPERFAMILY CAD & PB1 domains 75 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01399 Aip-Chr9 24633295 24635357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01399 82 163 B3 DNA Binding Superfamily AT4G23980 35.366 9.01e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aip09g01399 AUX_IAA 9.7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01399 K14484 - gmx:100784866 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01399 09 24633295 24635357 Aip09g01399 09 24633295 24635357 ECH
Aip06g00787 06 10438715 10439472 Aip09g01399 09 24633295 24635357 PCT