Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01398 ATGGATGAAGAAGCCTATTCCTCTTCCTCTTCCTCTTCACCTGTCAACCCTTCTTTCTCAATTGCTTCTTCAAAAAGTGACAAATTCTATGTGAAAGTGTACATGGAAGGCAATCCAATTGGCAGAAAACTCAATCTTTTAGCTCATGATAGCTACCGAGGATTGGTTAAGGCTCTTGAACATATGTTTAAAACTACCATACTCTTGGCAACTGAGTTAGATGCAGTACAAGCAGAGAGGTGCCATGTGCTAACTTATGAGGATGGAGAACGGGATTTGATTATGGTTAGAAATGTGTCTTGGGAGTAA 309 0.4013 MDEEAYSSSSSSSPVNPSFSIASSKSDKFYVKVYMEGNPIGRKLNLLAHDSYRGLVKALEHMFKTTILLATELDAVQAERCHVLTYEDGERDLIMVRNVSWE 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01398 102 PANTHER AUXIN-INDUCED PROTEIN 7 102 - -
Aip09g01398 102 MobiDBLite consensus disorder prediction 1 21 - -
Aip09g01398 102 Pfam AUX/IAA family 22 102 IPR033389 -
Aip09g01398 102 SUPERFAMILY CAD & PB1 domains 21 97 - -
Aip09g01398 102 Gene3D - 22 102 - -
Aip09g01398 102 ProSiteProfiles PB1 domain profile. 28 102 IPR000270 GO:0005515
Aip09g01398 102 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 102 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01398 Aip-Chr9 24616699 24617105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01398 22 101 B3 DNA Binding Superfamily AT1G59750 30.000 3.72e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip09g01398 AUX_IAA 5.4e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01398 K14484 - gmx:100781660 119.012