Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01346 ATGGAAGGCATTCTAATAGGGAGGAAACTCGACACCACTATTCTCTGGGGTATAGAGATGGATGAAGTTGTAGTTCAACCTGGTGAGAGATGCCATGTCCTCACTTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGGGATGTTCCTTGGGAGATGTTTGCTTCCACTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCATTACCTCTTGA 219 0.4338 MEGILIGRKLDTTILWGIEMDEVVVQPGERCHVLTYEDEEGDLVMVGDVPWEMFASTVKRLKITRVDTFITS 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01346 72 ProSiteProfiles PB1 domain profile. 1 68 IPR000270 GO:0005515
Aip09g01346 72 PANTHER AUXIN-INDUCED PROTEIN 9 69 - -
Aip09g01346 72 Pfam AUX/IAA family 32 65 IPR033389 -
Aip09g01346 72 Gene3D - 17 72 - -
Aip09g01346 72 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 69 IPR003311 GO:0005634|GO:0006355
Aip09g01346 72 SUPERFAMILY CAD & PB1 domains 29 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01346 Aip-Chr9 22842313 22842616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01346 1 67 B3 DNA Binding Superfamily AT3G61830 30.263 9.29e-07 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip09g01346 AUX_IAA 9.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01346 K14484 - gmx:100783140 106.301