Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01342 ATGGATGTTAAGGTTATTAAGAAAAGTGAAGGATCACAGGTGCAACAACTTGCAAACGAGATGGGATTAAGAAAAGGTCCATGGACGGTTGACGAGGACGCCATTCTCACCAATTATATCTCCACACACGGTGAGGGTCACTGGAATTCCGTCGCACGTTCTGCAGGATTGAAGAGAAGCGGTAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGACGTGCGCCGTGGAAATATCACACTCCAAGAACAGATATTGATTCTTGACCTCCACTTCCGGTGGGGCAATAGGTGGTCAAAGATTGCTCAGCACCTGCCAGGAAGAACGGACAACGAAATCAAGAACTACTGGAGGACGAGGGTGATAAAGCAGGCGAAGCAGTTAAAGTGCGACGTTAACAGCAAGCAGTTTAGAGACGCCTTGCGTTACGTGTGGATGCCGCGATTGCTCGAGAGGCTCCACCCTGCACCACAAAAACTCACTAACCAAACCGAACCTGAAACCCAAACCGGAGTTCTTGTTTCTAACCGAAACGGTTCAGATTCCGGACCTTTACTGTGCGCGAAACAGAGCAACTGCCTATCGGACTCGTCGTCGGGACAGAGTGCGAGTGTGGGAAATCAATGGTCAAGTTTCAATAATCAGCTGTTGTTTGAACAGGGGACAAATGGAAATGGTCATAGTTGTGGTGGTGGTGGTGAGTCACTAGAGTATTTGTGGAATGATGAGAATGTGTGGTTCTTGCAACAACAACTTTGCGATGACCTTGAAGTGAAATTCAATTCTCTTGCGTGA 801 0.4769 MDVKVIKKSEGSQVQQLANEMGLRKGPWTVDEDAILTNYISTHGEGHWNSVARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHFRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERLHPAPQKLTNQTEPETQTGVLVSNRNGSDSGPLLCAKQSNCLSDSSSGQSASVGNQWSSFNNQLLFEQGTNGNGHSCGGGGESLEYLWNDENVWFLQQQLCDDLEVKFNSLA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01342 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Aip09g01342 266 Gene3D - 82 123 - -
Aip09g01342 266 PANTHER MYB TRANSCRIPTION FACTOR 16 255 - -
Aip09g01342 266 MobiDBLite consensus disorder prediction 159 177 - -
Aip09g01342 266 CDD SANT 82 121 IPR001005 -
Aip09g01342 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 255 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aip09g01342 266 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Aip09g01342 266 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Aip09g01342 266 SMART sant 24 74 IPR001005 -
Aip09g01342 266 SMART sant 77 125 IPR001005 -
Aip09g01342 266 CDD SANT 27 72 IPR001005 -
Aip09g01342 266 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Aip09g01342 266 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Aip09g01342 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Aip09g01342 266 Gene3D - 25 77 - -
Aip09g01342 266 MobiDBLite consensus disorder prediction 158 177 - -
Aip09g01342 266 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01342 Aip-Chr9 22733197 22734692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01342 23 257 MYB Transcription Factor Family AT2G47190 50.593 3.41e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g01342 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01342 K09422 - gmx:778065 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00734 06 9751531 9753120 Aip09g01342 09 22733197 22734692 PCT