Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01341 ATGGAGATGGAGTACACAAGCAGTGTTCACATGATCATGAGAAGTTTATCGGATTGTGGCTCTTCAGTAACAAATGGGAGCGAGGAAGATATGGAAATCAGAAAAGGTCCATGGACAGAGGAAGAGGATTCTGCTCTGTTGAACCATATCACCACCTATGGTGAAGGACACTGGAACTCTGTTGCACGCTCTGCAGGTCTAAAACGAAGCGGGAAAAGCTGCAGATTAAGATGGTTAAATTACTTGCGTCCGAATGTTAGACGTGGGAACATCACCCTCGAAGAACAACTCTTGATTCTTGACCTCCATTCGCGATGGGGCAATAGGTGGTCGAAAATAGCAGAACAATTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAGAACGAGAGTGGTGAAGCAGGCGAAGCAACTAAAATGCGACGTCAACAGCAAACAGTTCAGAGACGCGTTGCGCTACGTATGGATGCCGCGCCTTATTGAGCAGATTCAAGCCCAAGGAAGATCCACCATGTGCGTCTCCCAAGCTCGCGAGATAGTTAATCCTGTCACTTCAGTTTCGATGGCTTCGTCTAAATCTTGCTCTTCATTCTCAGGATGTGAACAATTCCAAGCCTCTTCTTCGGTCTCTGATTCTTGTGTGTCTTATTACAGTTTAATGGGTAGTGGAAGTGGTGGGGGTTCTTCAGAGCATGCGGAAAAGGGAGCCACGTCATCATCCACGCCATTTGAACCGGAAAATGGTTTCGGGGGTGCTGATTTGTGGACTGATGAAAACATATGGTTCTTGCAGCAGCAACTTGCTGATGATGATCATCTTTGA 828 0.4662 MEMEYTSSVHMIMRSLSDCGSSVTNGSEEDMEIRKGPWTEEEDSALLNHITTYGEGHWNSVARSAGLKRSGKSCRLRWLNYLRPNVRRGNITLEEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDALRYVWMPRLIEQIQAQGRSTMCVSQAREIVNPVTSVSMASSKSCSSFSGCEQFQASSSVSDSCVSYYSLMGSGSGGGSSEHAEKGATSSSTPFEPENGFGGADLWTDENIWFLQQQLADDDHL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01341 275 SMART sant 87 135 IPR001005 -
Aip09g01341 275 SMART sant 34 84 IPR001005 -
Aip09g01341 275 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Aip09g01341 275 Gene3D - 92 133 - -
Aip09g01341 275 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Aip09g01341 275 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Aip09g01341 275 MobiDBLite consensus disorder prediction 227 251 - -
Aip09g01341 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 266 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aip09g01341 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 21 266 - -
Aip09g01341 275 CDD SANT 92 131 IPR001005 -
Aip09g01341 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Aip09g01341 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Aip09g01341 275 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Aip09g01341 275 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Aip09g01341 275 MobiDBLite consensus disorder prediction 227 247 - -
Aip09g01341 275 CDD SANT 37 82 IPR001005 -
Aip09g01341 275 Gene3D - 35 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01341 Aip-Chr9 22703354 22704759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01341 28 272 MYB Transcription Factor Family AT2G47190 51.163 1.10e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g01341 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01341 K09422 - gmx:100777932 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01341 09 22703354 22704759 Aip09g01341 09 22703354 22704759 ECH