Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01311 ATGAAGAGAAGAAAAGAAAGGAAGAACTGCCATCAAAGGAGGAAGAAGAGAAAGAAGGAGAAGAAGACGACGGAGAGAGAAGTTGCCACCGCCACTTTCTTCACCTCCAGCGCCGTCTCTGCCTTGCGCTGCAAATCGACAACTCTCCGCTGTTCACCTCTTTCACTCAAGCCTTTCGCCTCAGCCTCGGCCCTCAGCATCTCTTCCTCCATCGTCGTCGTTGAAGTTTCGAGTTCGATCATGTCGAAGGACAAAGACTTTACCGATGTTTCGCTCACCTTCAAATACCTCTTAGGTTATCAAAGAAGTGTTACTAATGGTAAGCTTCAAAAAAAGATGAATGATGAAAAAAAAAAGATTACAAGCAATCCAACTCTGAAGCCCGTGGCCGACTTTGTCCATCTCCTCCGCAAACAAAAGCACTTACTTGTCTGGTCTGATTTTCATGTAAGAGACGGCATTGCCATATACATTTACAAACCTTATAAAAGAATGAAAATTGATGCTAGAAGAAAGGCAGAGGCATCAAGCAATAGCCAATTTCTTGCAAACATGAGCCATGAATTGAGGACACCTATGGCTGCAATAATTGGGCTACTTGACATTCTTATGTCCAACGACTGTCTAACCAACGAACAGTGTGCAACGGTTACTCAGATAAGAAAATGCTCGACGGCGCTGCTCCGGCTTCTTAATAACATCCTGGATCTCAGCAAGGTTCTTTTGTCAATTTGCTCAATGTTGACGGATCCCAACTCTGATGATCCTCTTGTCCCTGAAATTACGCACATGTACAAGACTGACAGGGCTAAGTATGAAGCTACTGCACGTAGCTGA 837 0.4432 MKRRKERKNCHQRRKKRKKEKKTTEREVATATFFTSSAVSALRCKSTTLRCSPLSLKPFASASALSISSSIVVVEVSSSIMSKDKDFTDVSLTFKYLLGYQRSVTNGKLQKKMNDEKKKITSNPTLKPVADFVHLLRKQKHLLVWSDFHVRDGIAIYIYKPYKRMKIDARRKAEASSNSQFLANMSHELRTPMAAIIGLLDILMSNDCLTNEQCATVTQIRKCSTALLRLLNNILDLSKVLLSICSMLTDPNSDDPLVPEITHMYKTDRAKYEATARS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01311 278 CDD HisKA 179 239 IPR003661 GO:0000155|GO:0007165
Aip09g01311 278 Pfam His Kinase A (phospho-acceptor) domain 177 239 IPR003661 GO:0000155|GO:0007165
Aip09g01311 278 MobiDBLite consensus disorder prediction 1 25 - -
Aip09g01311 278 PANTHER OSMOSENSOR HISTIDINE KINASE 167 240 - -
Aip09g01311 278 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 174 239 IPR036097 GO:0000155|GO:0007165
Aip09g01311 278 MobiDBLite consensus disorder prediction 1 21 - -
Aip09g01311 278 PANTHER TWO-COMPONENT HISTIDINE KINASE 167 240 - -
Aip09g01311 278 Gene3D - 160 240 - -
Aip09g01311 278 SMART HisKA_10 177 243 IPR003661 GO:0000155|GO:0007165
Aip09g01311 278 SUPERFAMILY UBC-like 234 277 IPR016135 -
Aip09g01311 278 Pfam Ubiquitin-conjugating enzyme 233 277 IPR000608 -
Aip09g01311 278 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 104 278 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01311 Aip-Chr9 21895810 21898980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01311 166 240 Histidine Kinase Gene Family AT2G17820 87.013 7.32e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01311 - - ahf:112776726 310.457