Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01296 ATGGGAAAAATCCTGCTTGAAGTTCCTAGATTATTGATATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAAAGAATCATCATTTCCGGAACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAAACCGTCCTTTTTGGATACCAAACCTCCTAAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAGAGGTTTCAGTTGGGAATTAGTTTTTTCATTCAGAACTGGGAATCTAAATGATGAGAACATCAAGCAGTTGAAGCAGCTGATGGATCCATTTATGCATGTTCACAAAGGCAATATTCTTCAGAAGAATCTTCCTGTCTTGAAAGATTGCGGGGTGACTTTGATGTCGGGTGATTTGCAGAAAATACTTCTTTAG 459 0.3856 MGKILLEVPRLLILDEGHTPRNQSSQIWKVLSEIQTHKRIIISGTPFQNNFLELYNTICVVKPSFLDTKPPKLKKFCQRRLMQEKKESRGFSWELVFSFRTGNLNDENIKQLKQLMDPFMHVHKGNILQKNLPVLKDCGVTLMSGDLQKILL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01296 152 Gene3D - 3 137 IPR038718 -
Aip09g01296 152 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 64 IPR014001 -
Aip09g01296 152 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 151 - -
Aip09g01296 152 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 151 IPR044567 GO:0080188
Aip09g01296 152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 133 IPR027417 -
Aip09g01296 152 Pfam SNF2-related domain 11 134 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01296 Aip-Chr9 21597493 21597951 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01296 12 78 RAD5 or RAD16-like Gene Family AT5G05130 32.836 4.49e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip09g01296 SNF2_N 1.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01296 K10875 - lja:Lj1g3v3608470.1 206.838