Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01295 ATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATATAAACATCCAAGCAAAGATCTTGCTTGCATCCACTAAATCTTCTTGTGAAGGAATCAGTCTGGTTAGTGTTTCAAGGGTGGTGCTACTAAATGTGGTTTGGAACCCTTCGGTCAAAAGGCAAGCTATCATCCGTGCTTATAGGCTGGGCCAAAAGAAGGTGGTCTACACTTATCATCTCATAACACATGGGACCACCGAGTACACGAAATACTGCCATCAGGCCAAGAAGGGCCGGTTGTCTGAACTGGTCTTTTCAGCAAGGAACACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTCGATAAGATGGTGCGCCATGGGAAACTGAAGGACTTGTTTGGTGACTGTATGGTGCAACTAAAGGATTGTGATTTAATTGATAATTTGGATCCTAAAATTTTCTAA 483 0.4306 MSGKLDKNQRQLLIHSFNDINIQAKILLASTKSSCEGISLVSVSRVVLLNVVWNPSVKRQAIIRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKGRLSELVFSARNTEQDEPKSSAVEFEDEILDKMVRHGKLKDLFGDCMVQLKDCDLIDNLDPKIF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01295 160 CDD SF2_C_SNF 3 80 - -
Aip09g01295 160 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 153 IPR044567 GO:0080188
Aip09g01295 160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Aip09g01295 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 105 IPR027417 -
Aip09g01295 160 Pfam Helicase conserved C-terminal domain 2 69 IPR001650 -
Aip09g01295 160 Gene3D - 1 150 IPR027417 -
Aip09g01295 160 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01295 Aip-Chr9 21596697 21597179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01295 3 99 RAD5 or RAD16-like Gene Family AT5G43530 38.144 1.64e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01295 K10875 - gmx:100807262 198.749