Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01294 ATGGATCCATTTGTGCATGTTCACAAAGGTAGTATTCTTCAGAAGAATATTCCTGGCTTGAAAGATCGCGTGGTGACTTTAATGCTGGGTGATTTGCAAAAAACACTTCTAGAGGGCATTGAAGGACATCTAAAAACACTGCCTTTCCATAGCAAGTCGGCCTTGGTGTCTGTCCATCCATCCTTTTTCGTTTGCTGCACTCTTTCACCTAAGGAAAGAGCTCTTGTTGACATGGAACAGTTGAAAGCCCTCAAACTGAATCCGAATGTTGGTGTCAAAACAAGATTTTTGGTGGAGTTTGTAAGGATCTGTGATGCAATGAATGAGAAAGTGCTTGTGTTTATCCAGTTCCTTGATCCTTTGACTTTAATCGTAGAGCAATTAAACCAAGCAAAGATCTTGCTTGCATCCACTAAAGCTTGTTATGAAGGAATCAGTCCGGTTGGTACTTCGAGGGTGGTGCTGCTGGTTTGGAACCCCTCGGTCGAAAGGCAAGCTATCAGCCATGCTTATAGGCTGGGCCAAAAGAAAGTGGTCTACACTTATTATCTCATAATACATGGGACCACCGAGTACACGAAATACTGCCATCAGGCCAAGAAGAACCAATTGTCTGAACTGGTCTTTTCAGCAAGGAGCACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTTGATAAGATGGTGCGCCATGGGAAACTGAAGGACTTGTTTGGTGATTGTGTGGTGCAACTAAAAGATTGTGATTTGATTGATAATTTGGATCCTAAAATTTTCCAAAATTCAAGCTTAAGGTGGGAGTGGCTTCTTTGA 831 0.4272 MDPFVHVHKGSILQKNIPGLKDRVVTLMLGDLQKTLLEGIEGHLKTLPFHSKSALVSVHPSFFVCCTLSPKERALVDMEQLKALKLNPNVGVKTRFLVEFVRICDAMNEKVLVFIQFLDPLTLIVEQLNQAKILLASTKACYEGISPVGTSRVVLLVWNPSVERQAISHAYRLGQKKVVYTYYLIIHGTTEYTKYCHQAKKNQLSELVFSARSTEQDEPKSSAVEFEDEILDKMVRHGKLKDLFGDCVVQLKDCDLIDNLDPKIFQNSSLRWEWLL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01294 276 CDD SF2_C_SNF 90 185 - -
Aip09g01294 276 Gene3D - 125 261 IPR027417 -
Aip09g01294 276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 130 258 IPR044567 GO:0080188
Aip09g01294 276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 130 IPR044567 GO:0080188
Aip09g01294 276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 130 258 - -
Aip09g01294 276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 130 - -
Aip09g01294 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 212 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01294 Aip-Chr9 21593330 21594263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01294 100 212 RAD5 or RAD16-like Gene Family AT5G05130 33.333 1.55e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01294 K10875 - lja:Lj1g3v3609480.1 308.145