Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01290 ATGTTCTCCAACTCATCATCTTCATCTACTCTATATTATATCCAACATGTAAATCAAGATAATGGAGAAGCCTATGGTGAACCTACAAAATACAATTTTTCGTCTATTAACACAAGTTGGATTTCTGAAGCTCTTGAATTTTCTTATTCATACGCATTCAGCAATACTTCATCATTGGGAACCAATTGGAGCATTATTATTGATAGTGGCCATAACCCTTTGTTTCTCAACTCCGCAAGGGTCACAAGAACAAGTGTGATCTCTCTAGGGTTCTCGGAAACAACAGTAACGGATTTTCTCAGGACTCAAAACAATGATCTTCATCAAAGTTCAATGAGCATGTCTTGGGCCACAAAAGATGGAAGGGCTATTGTACAAGGGATCCGAAATACTCGTTTGGTGATTTCTAATGATACAGTTTTGCTTCAATTATTGGACCAAAATGGAAACCCTAAAGGTGTTGGAGACACTGCTATACCGTGCAAAAATGAAAGATTTGGATCTAGTTTGAATATTCAGAATACTGAATATATGATTCACTGCAGCACAATTGATATCATGGGAATAGAATCGGTATATGTTGTGGCTATTCCAAAGAATGAATTACTTAGCTTTGACCAGCATTATAAGAAAAAAGGGTTGACTCTGTTGATTGTAATGATATTCATGATATTGATTGCTCTCCTAAGCTTTCTAAGCATGAATGCAAGAAATGCGAAGCGAGAAATGCGATTGCGTGCCTCACTCTTGAAACAAATGGAAGCTACTCAACAAGCTGAGAGAAAGAACATGAATAAAAGCCTTGCATTTGCTGCTGCCAATCATGATGTTAGGGCTTCTCTTGCAGGCCTTACTGCTTTGATAGACATGTCCTTTGACTTTGTTCAAAATGCGTCTGAATTGGACACCAACTTAAAACAAATGAAAGGTTGCACCCAAGACTTACTAGGGCTGCTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATACAGCTTGAGGAAGAGGAATTTGATGTATCAATTCTGTTGGAAGATATAGTTGACTTATACCACCCTATGGCTTCAAAGAAAGGTGTGGATCTAATCTTGGACCCTTGTGATGGTTCTATTATTAGATACTCACGTGTTAAAGGAGACAGAGGAAGACTCAAACAAGTTTTGTGTAATCTTTTGAGCAATGCTGTTAAATTTACTGATGAGGGGCACATAGTGGTTAGGGCAAGAGCTCAAAAGCCAAGTTTGCATAATTCATTAATGGCTGGTAGTGAAAAACATGTATCATGCTTATGTTTCAAGAAAATTAGCAGTGATGAAATTGAAGGCACGAGTAATTCAACACAAGCAGATCCATATTGCGTTATGGATTTTATATTTGAAGTGGATGATACGGGAAAAGGAATCCCCAAAGAGAAGTACAAGTCTGTGTTTGAGAACTATGTCCAAGTCAAAGAAACCTCTCTTGGAGTTGGAGGAACTGGCTTGGGACTTGGGATCGTGCAATCACTGGTGCGTTTGATGCATGGAGACATTGAAATTTCAGAGAAGGACGTGGGAGAAAAGGGAACATGCTTCAAGTTCAATGTTGTCCTTAATGTATACGAGACAATCACGAATGCTGCTAGCACAAAAGAAGAAGAAGAAGAAGGTGTTGATGAAAGAAACCAAACTCAGGCGGCATTACCAACCCTTCAAAGTTGTAGCTCTGGTTCAAGCATTTGTTCCCTTAGTCCAAGATTCCGAATCCGCAGCTCCAGTCCCAAGCCAGCGCCTTCTCGTGTCATTATGCTAATCGCCGATGAGTATCGCCGGAAGGCCACAGAGAAGTTCATGGAGGGCTTAGGGATCAAAGTTGCCGCCGCGAAACGGTTGGAGGATCTATTTGATGTCCTGAAGAAGATGAAACACAAGTGTCTCTATTCAAGCAGCCACAGTAGTGGTTCTCAAGGATCAGAGTATTTGAGTGCGAGCTCTCACTCCCGTTCCAGCAGAGTTAGAGTTGCATTGAGTTCTATGGATGGAAAGACGGATATTGGAGCAGCATCTGATGGCTTTATCCTTATTGTGGTTGAGACAGATGCAGGGCCACTTTTGGAGCTGTGTAAGATAGTTTCCAACTTCAAAAGAGGGCTTTGTAACCCTTGTCAAGTTGTTTGGTTAGATAACAAAATTCTCTTTAAGAACCTTGATAAGGACACGCTTGATCCCAAAGACATGGTTCTATCGAAACCGTTTCACGGTAGCCGTTTGTTCCAGGTTATAAAGCTTCTTCCCGAGTTCGGTGGTGGGAAAAGCTCATCCAAATTGAACACTCAGGAATCCTTTGTGGATCAACCTTCTGTTGGGTCCAAAGAAATACAAGAATGTGAGGATACAGAAAAGCCATTGAGTGGTAAGAAAATTTTGGTTGTTGATGATACTCCATTGATGCGCATGATTGCTTTGCGTACTTTGATCCAGCTTGGAGCGATTATAGAGCAGTGCGAGAATGGAGAAGCAGCTGTGCATCTAGTTCGTGATGGTTTAATCAAGGATTTTCCTAATCCCCCTTACGATTACATCTTAATGGATTGCCAGATGCCAATAATGGATGGGTTCGAGGCAACAAGGAAAATAAGAAAGATAGAAAAGAGCTATGGTAATATTCGCATTCCTATAATTGCATTAACAGCTGACAGTGACAAAATGACCATAGACGCTGGAATGGACTTTCACTTGGTAAAGCCTATCGACAGAAACAAATTTCTTGAAGCCATTCGAGACATCAATGCTAAAAAGCGCTCCATTTAA 2796 0.4049 MFSNSSSSSTLYYIQHVNQDNGEAYGEPTKYNFSSINTSWISEALEFSYSYAFSNTSSLGTNWSIIIDSGHNPLFLNSARVTRTSVISLGFSETTVTDFLRTQNNDLHQSSMSMSWATKDGRAIVQGIRNTRLVISNDTVLLQLLDQNGNPKGVGDTAIPCKNERFGSSLNIQNTEYMIHCSTIDIMGIESVYVVAIPKNELLSFDQHYKKKGLTLLIVMIFMILIALLSFLSMNARNAKREMRLRASLLKQMEATQQAERKNMNKSLAFAAANHDVRASLAGLTALIDMSFDFVQNASELDTNLKQMKGCTQDLLGLLNSILDTSKIEAGKIQLEEEEFDVSILLEDIVDLYHPMASKKGVDLILDPCDGSIIRYSRVKGDRGRLKQVLCNLLSNAVKFTDEGHIVVRARAQKPSLHNSLMAGSEKHVSCLCFKKISSDEIEGTSNSTQADPYCVMDFIFEVDDTGKGIPKEKYKSVFENYVQVKETSLGVGGTGLGLGIVQSLVRLMHGDIEISEKDVGEKGTCFKFNVVLNVYETITNAASTKEEEEEGVDERNQTQAALPTLQSCSSGSSICSLSPRFRIRSSSPKPAPSRVIMLIADEYRRKATEKFMEGLGIKVAAAKRLEDLFDVLKKMKHKCLYSSSHSSGSQGSEYLSASSHSRSSRVRVALSSMDGKTDIGAASDGFILIVVETDAGPLLELCKIVSNFKRGLCNPCQVVWLDNKILFKNLDKDTLDPKDMVLSKPFHGSRLFQVIKLLPEFGGGKSSSKLNTQESFVDQPSVGSKEIQECEDTEKPLSGKKILVVDDTPLMRMIALRTLIQLGAIIEQCENGEAAVHLVRDGLIKDFPNPPYDYILMDCQMPIMDGFEATRKIRKIEKSYGNIRIPIIALTADSDKMTIDAGMDFHLVKPIDRNKFLEAIRDINAKKRSI 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01290 931 Gene3D - 783 930 - -
Aip09g01290 931 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 253 332 IPR036097 GO:0000155|GO:0007165
Aip09g01290 931 PANTHER HISTIDINE KINASE CKI1 17 925 - -
Aip09g01290 931 SMART REC_2 801 921 IPR001789 GO:0000160
Aip09g01290 931 ProSiteProfiles Histidine kinase domain profile. 272 535 IPR005467 -
Aip09g01290 931 PANTHER TWO-COMPONENT HISTIDINE KINASE 17 925 - -
Aip09g01290 931 SMART HisKA_10 265 331 IPR003661 GO:0000155|GO:0007165
Aip09g01290 931 ProSiteProfiles Response regulatory domain profile. 802 925 IPR001789 GO:0000160
Aip09g01290 931 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 533 IPR003594 -
Aip09g01290 931 Gene3D - 249 332 - -
Aip09g01290 931 PRINTS Bacterial sensor protein C-terminal signature 477 487 IPR004358 GO:0016310|GO:0016772
Aip09g01290 931 PRINTS Bacterial sensor protein C-terminal signature 459 473 IPR004358 GO:0016310|GO:0016772
Aip09g01290 931 PRINTS Bacterial sensor protein C-terminal signature 493 511 IPR004358 GO:0016310|GO:0016772
Aip09g01290 931 Pfam Response regulator receiver domain 803 922 IPR001789 GO:0000160
Aip09g01290 931 Gene3D - 333 539 IPR036890 -
Aip09g01290 931 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 320 530 IPR036890 -
Aip09g01290 931 CDD REC_hyHK_CKI1_RcsC-like 803 921 - -
Aip09g01290 931 SUPERFAMILY CheY-like 797 924 IPR011006 -
Aip09g01290 931 SMART HKATPase_4 381 535 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01290 Aip-Chr9 21508333 21512128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01290 1 928 Histidine Kinase Gene Family AT2G47430 39.487 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip09g01290 HATPase_c 2.4e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01290 - - ahf:112708949 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01290 09 21508333 21512128 Aip09g01290 09 21508333 21512128 ECH