Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01269 ATGGCTTCTCCTCCTCCCTTATCACTAGACGTCGTCGGATCAGACACCGTTACAACAACAGTTTCTAGCTCAAGCACAACGCCACCACGCCGTTCATCTCCGTTACAGAACCTCAGCCCAAGCATCCTCATCATCGTAACGGTTCTTGCCGTCACCGTTATAGTCTCCCTTGCACTCTGTTTCCTCCTCCGCCACATCAACCGCCGCTGCCTACGCCGTCTCTCTCGTTTCTCAGCCACGCCATCTTCCTCCGCCACGCCAATCTTCACCTCCAGCCGCCGAATCTCGCCGGAAGTCCCTCAAAACTCTTCCACTTCCTACTCTTACATCATCGACTCCCTACCGCTTTTCACCTTCTCCTCCGTCACTCGCCGCTCCTCCGCCGCCGACTGCGCCGTTTGCCTCTCGAAGTTCCGTAACGACGATCTCCTCCGCCTCCTACCTATCTGCTGCCACGCCTTCCACGCCGAATGCATTGACACCTGGCTTCAGTCCAACCTCTCCTGCCCGCTCTGCCGATCCGCCATTGTCGCCACCGAATCGGACCTCGGCAAGGTCGTCCGCTCGTCTTCCTCCACCTCCGGCAGTGACAGTTTCCGCCTCGAGATAGGGAACGTGAGCCGCCGCGGCACCGCGCCCGATGGCTCCGCCGCAGTTTCTGGCGAATCCCGCGCCGGAGGCGCTAGGTCTAGGTCATACTCCATTGGATCGTTCGAGTATTTCGTGGATGAAGATTCGGAAGTTCCATTCAGCCACGCTCATCGAAGAAGCACGTCTGATCAGAAGGACATTCCGGCGTCGGCGGAGGCTCCGGCGAGTCAGCATGAAGCGAATCTCGCCGGCGAGGTTGGCGGCGTAAGGAGCTGGCTGAAGGAGTACATGGATAGAGTCTCAGCTTCTATATCGACACGAACGGCGTCGTTTCGAAGTTCTGGAAGGTTCTTCAGCGGTACTGGTGGGAGTAGTCGCCGAAGCGACGTCGTTCCAGTCGTAGCTGCAGAATATGACATTGAAGGTAACAGAATTGGTGAAGAGATCACCGAAATGTTTCGCTGGCTCTCAGGGGTATGA 1071 0.5742 MASPPPLSLDVVGSDTVTTTVSSSSTTPPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHINRRCLRRLSRFSATPSSSATPIFTSSRRISPEVPQNSSTSYSYIIDSLPLFTFSSVTRRSSAADCAVCLSKFRNDDLLRLLPICCHAFHAECIDTWLQSNLSCPLCRSAIVATESDLGKVVRSSSSTSGSDSFRLEIGNVSRRGTAPDGSAAVSGESRAGGARSRSYSIGSFEYFVDEDSEVPFSHAHRRSTSDQKDIPASAEAPASQHEANLAGEVGGVRSWLKEYMDRVSASISTRTASFRSSGRFFSGTGGSSRRSDVVPVVAAEYDIEGNRIGEEITEMFRWLSGV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01269 356 MobiDBLite consensus disorder prediction 1 35 - -
Aip09g01269 356 MobiDBLite consensus disorder prediction 251 277 - -
Aip09g01269 356 MobiDBLite consensus disorder prediction 207 229 - -
Aip09g01269 356 CDD RING-H2_PA-TM-RING 130 173 - -
Aip09g01269 356 SMART ring_2 131 172 IPR001841 -
Aip09g01269 356 Pfam Ring finger domain 130 173 IPR001841 -
Aip09g01269 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 323 - -
Aip09g01269 356 MobiDBLite consensus disorder prediction 12 35 - -
Aip09g01269 356 SUPERFAMILY RING/U-box 108 178 - -
Aip09g01269 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 182 IPR013083 -
Aip09g01269 356 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Aip09g01269 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01269 Aip-Chr9 21040274 21041420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01269 20 201 C3H Transcription Factor Family AT4G28890 33.862 2.31e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01269 K10663 - gmx:100817751 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01269 09 21040274 21041420 Aip09g01269 09 21040274 21041420 ECH