Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01262 ATGTACGGAATGATGACCACGCATGCTTTGGGAACCAATGTGAATGTCCACGATCACGTTGAAACGACCGCAAAGTCGACCTTTCACGGCGTTCCTGATGCGGTGGGAGCGTCATTGCTTCCCCGGAGCCCGAGCTTTAAGAACATTTTTTTGGCGGAGAACTGGGCGGAGCTGCCACTCAAGGAGGACGACACGGACGACATGGTCATCTACGGTGCATTGCAGGAGGCTGCCACCACCGGGTGGTGCCCCGCCAGAGAGAATGGCGGCGTTGGTAGCGCGGCGGTGAAATTGGAAAATGAGGGCAAGGGCAATGGCATTGTGGAAGCGCGTGAGGTTCACGCGCTGGCTAAGGGAGGTAGAGGGTATAGAGGGGTTCGGAGGCGGCCGTGGGGAAAGTACGCGGCTGAGATAAGAGATCCGAAGAGGAACGGTGTGAGAGTGTGGCTTGGGACTTATGAGACGGCTGAGGATGCGGCTTTGGCTTATGATCGAGCCGCGTTCAAGATGCGTGGCTCAAAAGCCAAGCTGAATTTTCCTCACTTGATTGGGTCGGACGAAGTTGGTGAGCCGGCGAGAGTTACACTGAAACGGCGCTCACCGGAGACACCCTTGCCATGCCCGTCTTACTCTTTTGATTATTGTAACAATGCAGAGAAGCGGAGCAAAATTGTTGGTCGGGGTGCAGTGGCGGCCACGGCTTTAGAGCCCACTAATAAAAGTATGTGGCAATTTTCCGTCGGTGAATCTTGGTGGCAACAATAA 765 0.549 MYGMMTTHALGTNVNVHDHVETTAKSTFHGVPDAVGASLLPRSPSFKNIFLAENWAELPLKEDDTDDMVIYGALQEAATTGWCPARENGGVGSAAVKLENEGKGNGIVEAREVHALAKGGRGYRGVRRRPWGKYAAEIRDPKRNGVRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDEVGEPARVTLKRRSPETPLPCPSYSFDYCNNAEKRSKIVGRGAVAATALEPTNKSMWQFSVGESWWQQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01262 254 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Aip09g01262 254 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Aip09g01262 254 PRINTS Ethylene responsive element binding protein signature 162 182 IPR001471 GO:0003700|GO:0006355
Aip09g01262 254 ProSiteProfiles AP2/ERF domain profile. 122 180 IPR001471 GO:0003700|GO:0006355
Aip09g01262 254 CDD AP2 130 182 IPR001471 GO:0003700|GO:0006355
Aip09g01262 254 Pfam AP2 domain 122 172 IPR001471 GO:0003700|GO:0006355
Aip09g01262 254 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Aip09g01262 254 SMART rav1_2 122 186 IPR001471 GO:0003700|GO:0006355
Aip09g01262 254 PANTHER DNA-BINDING DOMAIN 30 219 IPR044808 GO:0003700|GO:0009873
Aip09g01262 254 PANTHER BNAC04G53270D PROTEIN 30 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01262 Aip-Chr9 20579692 20580515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01262 26 236 AP2-EREBP Transcription Factor Family AT2G44840 49.289 4.39e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip09g01262 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01262 K09286 - gmx:100793366 236.884