Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01253 ATGGCTACCACCTTCAACCTCATCAAAGACATCGACGCATCTCAAGACACCTTGTCGTATAGGATAAAGGTCAGAGTTATTAAAATTTGGTCACTGTCTACGGCGGAGCAAAAATACCAAAAACCAATGTTGGAGCTGGTGGTCATGGATCATTTGGAGATCGCATCCAATGCTCAATTAGAAACCATCAAAGAAGGTACCATGGGTATATCAAATACCAATCACAATTCTATTATGCACATCAATGCTGATTTTCAGGAGGTGAAAGACTTTCAAAAGAGTCTTATAATGTCAGGAGTCCCATCTGCAAATCAAGTCACCCAAATAGTTGCTGAGCTAGCATATTCCCTTGAAGAAGACCTCATCAACAATTCCATTTATAAGCCCATATCTGAGCTAAAAGAGACATTTGAGAAGAACGGTTGGTGGCACAAAAGTTGCAAACAATGCTTCACTTCCCTAAAGGAAGCAGAAAATTCATACCATTGTGCAAAGTGCAACTCACATCCCTTGACACACACCCCAAGGTATAGCATTAATATGAAGGTTGCTAATGACACTGACACGACTATTTTCTTGCTGTACGACAAAGAAGCCTCCAGATACTTGGGTATCTCTGCCTCTGATTTAAGGCTCACACAACTGACTAAGGGAGGAGTCCACGAGGAATATCCAACTGAGCTGAATGCATTAGTGGGGAAGAAATTCCTGTTCAAGTTAATTGTTAAGATGGAAGATGTCAATGCATTCCAACCCTACAAGATTGTTGTTGCTAAACTTTGTGAGGAGGACTCAGTTATGAACAAGTTTCTTGAAAAGAACAACATACATGAGGACACAAGTGCCCCATCTGCTGAGAATTCAATGGAGGTTCCATTGGATGCATTCTCAACCCCTAAGAGCAAGATAATTACTGGTGGATGGTCCAAGAAACTAATTGATGTCTACCCAGAAGATCTTGATGCATCATATTCAAAGTGTAGGAAGGCCACCAATGGCGACAACGCAACTCTTGCCAAAGTCCATCATGATTAG 1035 0.4126 MATTFNLIKDIDASQDTLSYRIKVRVIKIWSLSTAEQKYQKPMLELVVMDHLEIASNAQLETIKEGTMGISNTNHNSIMHINADFQEVKDFQKSLIMSGVPSANQVTQIVAELAYSLEEDLINNSIYKPISELKETFEKNGWWHKSCKQCFTSLKEAENSYHCAKCNSHPLTHTPRYSINMKVANDTDTTIFLLYDKEASRYLGISASDLRLTQLTKGGVHEEYPTELNALVGKKFLFKLIVKMEDVNAFQPYKIVVAKLCEEDSVMNKFLEKNNIHEDTSAPSAENSMEVPLDAFSTPKSKIITGGWSKKLIDVYPEDLDASYSKCRKATNGDNATLAKVHHD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01253 344 CDD RPA1_DBD_C 130 248 IPR013955 -
Aip09g01253 344 Pfam Replication factor-A C terminal domain 137 262 IPR013955 -
Aip09g01253 344 Gene3D - 117 272 IPR012340 -
Aip09g01253 344 PANTHER REPLICATION FACTOR A 1, RFA1 139 285 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g01253 344 PANTHER BNAC01G35430D PROTEIN 139 285 - -
Aip09g01253 344 SUPERFAMILY Nucleic acid-binding proteins 139 267 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01253 Aip-Chr9 20326902 20329443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01253 143 257 Core DNA Replication Machinery Family AT5G08020 28.448 5.19e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01253 - - ahf:112707100 357.836