Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01248 ATGGTGTCCAACGCCAGCAAGAAAAAGGCCGCGCAGAAGAAGGCGGTAATAGCGGCTAAGAGAGGAGGCAAGGCGTCTGCTTCGTTGAATGCGGCGGCATCAGCTTCAGCCTCGGATCGGACCTACACCGGTGACTTCTGCTCACATTCCCTTTCCAGGGATATTAGGAGAGCTCTTGATGAGGATCCTGAGAATGAGCTTTATAAGAAGTCCTTAGAAGTTACTAATAAGCCATATATCAACTTCTGTGTTTTTAGAATAGATTTTGCTAAAGGTCCCAGCATTGCACATGGAGATCCACAAAAATGGGCTTGGTCAGATGACTGGTGGTGGGGAATCCTCTACATCTTCAAAAACAAAGGGGTTGATATTCATGGGATTCTTCTTCTGAGAACTTTGATTGGAAAGATATTTGGCAGCATTGGATCAGTGGGAGGAGCCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTAGTGCTTGTATTGCTTCTTTGCTTGGACAAGATGGTTCCACCAAGTATCATATAAATTCAAGATGGTTTCAAGTATTCAAAAGTGATCGAGATCGTCGAGATCTGGTAACTTGTGGGTCTGCAACAGGAGTTTCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTAGAAGAGTGCGAACTGCAATGGGATGGTGTAAGAATGGAAATTGCAGACATTTTGGGTCTGGCGGATTCATAA 726 0.4477 MVSNASKKKAAQKKAVIAAKRGGKASASLNAAASASASDRTYTGDFCSHSLSRDIRRALDEDPENELYKKSLEVTNKPYINFCVFRIDFAKGPSIAHGDPQKWAWSDDWWWGILYIFKNKGVDIHGILLLRTLIGKIFGSIGSVGGALALGKEGPLVHTSACIASLLGQDGSTKYHINSRWFQVFKSDRDRRDLVTCGSATGVSAAFRAPVGGVLFALEECELQWDGVRMEIADILGLADS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01248 241 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 120 225 - -
Aip09g01248 241 Gene3D Clc chloride channel 113 236 - -
Aip09g01248 241 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 120 225 - -
Aip09g01248 241 Pfam Voltage gated chloride channel 125 225 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip09g01248 241 PRINTS Chloride channel signature 200 219 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip09g01248 241 PRINTS Chloride channel signature 136 155 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aip09g01248 241 SUPERFAMILY Clc chloride channel 122 226 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01248 Aip-Chr9 20078131 20082685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01248 120 225 Ion Channels AT5G26240 83.019 3.04e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01248 K05016 - gmx:100811908 189.889