Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01237 ATGCCTTCCCAAAAAAGGGTTATGTGGAAATCCTTCATAGTTGGTTGCTTCAAAGACAATCCCTTTTCCAATTCCTCCTTGGACGAAACACACACATCATCAGTTTCAAAAAAGACACTTTCTAGGAGAATCTCGCTCTCTGATCTGAGCAATTCTTCATCACAGTCTATAATGAGTGATTTGTCAAATTCCCTCACAGGAATTGGATCAAACATTCATATTTTCACTTACCAGGAGCTGAAAGAGATCACACATGGGTTCAGCAAGAACAATTTCCTCGGCGAAGGTGGATTCGGAAAGGTTTATAAAGGCTTCATTGATGAGAAATTTAAGCCCAGGCTTGTGCCTCAGGTTGTTGCTGTTAAGGCCCTCAATTTGGATGGCAAACAAGGACACAGAGAGTGGTTGGCTGAAGTAATCTTCTTGGGGCAGTTGAAGCATCGCAATCTGGTGAACTTAATTGGATACTGCTGTGAAGATGAACACAGGCTTCTTGTCTATGAATACATGGAGAGGGGCAATCTGGAAGAGAAGCTTTTCAAAGGTTATTTAGCAACATTACCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGACTTTGTTTCCTTCATGAAGAAGAAAAGCCAGTCATATACAGAGATGTTAAAGCCTCAAACATTCTGTTGGACGCTGACTATAATGCGAAGCTGTCGGATTTCGGTTTAGCAATAGATGGACCAGGGGAAGATCAAACACATGTTACAACTCGTGTTATGGGTACCCGCGGTTATGCTGCTCCTGAGTATATCATGACAGGTCATTTGACAACTATGAGCGACGTGTATAGCTATGGAGTTGTTCTGTTAGAGCTACTAACGGGAAGAAAATCAGTGGACAAGAAACGGCCAAGCAGAGAGCAAGATTTAGTAGAGTGGGCAAGGCCAATGCTAAAGGATTCTCTTAAACTTGAGAGAATAATGGACCCAAGACTTGAGGGTCAGTACTCCACACAAGGTGCAAGAAAGTTAGCATCTTTGGCTTACCAATGCCTAAGCCACCACGCAAAGAATAGGCCTTCAATGCGAACCGTGGTTAAGACCTTGGAGCCTCTCTTGGAACTTAACGATATCCCAATTGGTCATTTTGTTTATGTGGCCCCCACTGAAGTGGTTGTTGTAACCGATTGTTCTTGTTATGACAACAGCAATATTAAAGAAGAAGGTAAAGTTGAAGAGGAAATAAAGGGAGAGAAAAAGGAGAAGGAGAAGGGTCGCAATAATTTAAAGAAGGAGCGAAAAAGTCGTAGCCGTAGGTGTAGAGTTAAGCCAATCAGGTCTCGTGCTGTTTACTCTGACACTGCTCTGTATAAGACTCTTGCTACCAGTCCATACTTTCCCAAACAAGGACCAGAGACACATAATTGTGATGGAAATCGCCCCATATTGCCAATTTAG 1443 0.4255 MPSQKRVMWKSFIVGCFKDNPFSNSSLDETHTSSVSKKTLSRRISLSDLSNSSSQSIMSDLSNSLTGIGSNIHIFTYQELKEITHGFSKNNFLGEGGFGKVYKGFIDEKFKPRLVPQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRNLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLCFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPGEDQTHVTTRVMGTRGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGRKSVDKKRPSREQDLVEWARPMLKDSLKLERIMDPRLEGQYSTQGARKLASLAYQCLSHHAKNRPSMRTVVKTLEPLLELNDIPIGHFVYVAPTEVVVVTDCSCYDNSNIKEEGKVEEEIKGEKKEKEKGRNNLKKERKSRSRRCRVKPIRSRAVYSDTALYKTLATSPYFPKQGPETHNCDGNRPILPI 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01237 480 Pfam Protein tyrosine and serine/threonine kinase 90 364 IPR001245 GO:0004672|GO:0006468
Aip09g01237 480 PANTHER OS01G0588500 PROTEIN-RELATED 34 425 - -
Aip09g01237 480 CDD STKc_IRAK 93 367 - -
Aip09g01237 480 PANTHER BNAA02G16030D PROTEIN 34 425 - -
Aip09g01237 480 SUPERFAMILY Protein kinase-like (PK-like) 69 364 IPR011009 -
Aip09g01237 480 SMART serkin_6 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01237 480 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Aip09g01237 480 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip09g01237 480 Coils Coil 407 427 - -
Aip09g01237 480 Gene3D Transferase(Phosphotransferase) domain 1 170 373 - -
Aip09g01237 480 MobiDBLite consensus disorder prediction 410 425 - -
Aip09g01237 480 Gene3D Phosphorylase Kinase; domain 1 43 169 - -
Aip09g01237 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Aip09g01237 480 MobiDBLite consensus disorder prediction 410 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01237 Aip-Chr9 19734584 19737689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01237 73 417 Glycoside Hydrolase AT3G07070 45.690 8.01e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip09g01237 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01237 - - gmx:100790454 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01237 09 19734584 19737689 Aip09g01237 09 19734584 19737689 ECH
Aip09g01237 09 19734584 19737689 Aip10g02533 10 112266979 112269340 ECH