Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01197 ATGCCCTGTTCTGTTATCCAAAGGAATTCAACCCTGCCGCGCGAGAAAGGAGTGAAAATGGCGGCTTTAGAATCAAGTTTGAGAGTGTTAGTAGGAGTTCATCCTTCTTGGTGTCCCAACAACAGAAAAGCACCCCAAACCATATCTATAAGGCTCCTCCGCACACGTGTCTGCACCTCTGTTGCTTCTTCCACTCCCACTTCCACTGCCACTACCCCTACCCCTTTGCATTTCCAACATGAACTTCTCCAGCACACCACAAACCTCAAGAAGCTTTACGCCTCTAACTTGCCCTGGTCACTCTCCCCCGCCGACGTCAAGGCTCTCTTTTCTCAATGCGGAACGGTTACCGATGTTGAGATGATAAAGAACAAGGATGGTGGATTGACTGGCTTCGCCTTCATTACCATGTCTTCTGCCCAAGAGGCTCAGGCTGCTATTCATAAATTCCACTCTCTTCAAATATCAGGCCGGACAATTAAAGTAGAGCTTGCAAAGAGATTTAAGAAACCCCGTCCTCCAGGTCCTCCTGCCGGAGAGACGCGTCATAAAATTTATGCATCCAATCTTGCTTGGAAAGTAAGATCTGGCCATCTCAGAGAATTCGTCACTGAGAATTTTAGAGAACCAGTTTCAGCCAGAGTTGTGTTCGATAGTTCTTCTGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGTTACAAAGGAGGAAGCAGAGGATGCCATTTCTTCTTTGGATGGGAAGGAATTAATGGGGCGAGCGGTTCGCCTAAAATTTAGCCGAAAGACCATTGAAGAAGCTGATACTGATAGTGGCAAAGAAGAGCAGGGTTATCATGATCAATTGGAAGCACCATAA 858 0.4639 MPCSVIQRNSTLPREKGVKMAALESSLRVLVGVHPSWCPNNRKAPQTISIRLLRTRVCTSVASSTPTSTATTPTPLHFQHELLQHTTNLKKLYASNLPWSLSPADVKALFSQCGTVTDVEMIKNKDGGLTGFAFITMSSAQEAQAAIHKFHSLQISGRTIKVELAKRFKKPRPPGPPAGETRHKIYASNLAWKVRSGHLREFVTENFREPVSARVVFDSSSGRCAGYGFVSFVTKEEAEDAISSLDGKELMGRAVRLKFSRKTIEEADTDSGKEEQGYHDQLEAP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01197 285 MobiDBLite consensus disorder prediction 262 285 - -
Aip09g01197 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Aip09g01197 285 SUPERFAMILY RNA-binding domain, RBD 171 264 IPR035979 GO:0003676
Aip09g01197 285 SMART rrm1_1 91 163 IPR000504 GO:0003723
Aip09g01197 285 SMART rrm1_1 184 258 IPR000504 GO:0003723
Aip09g01197 285 SUPERFAMILY RNA-binding domain, RBD 85 175 IPR035979 GO:0003676
Aip09g01197 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 161 IPR000504 GO:0003723
Aip09g01197 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 255 IPR000504 GO:0003723
Aip09g01197 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Aip09g01197 285 Gene3D - 78 180 IPR012677 -
Aip09g01197 285 Gene3D - 181 283 IPR012677 -
Aip09g01197 285 PANTHER OS02G0815200 PROTEIN 45 277 - -
Aip09g01197 285 PANTHER CHLOROPLAST, PUTATIVE-RELATED 45 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01197 Aip-Chr9 18355252 18358131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01197 92 273 Eukaryotic Initiation Factors Gene Family AT4G34110 28.342 1.23e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01197 - - gmx:100793319 246.128