Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01196 ATGTTGAGCATAAACTCCACCGGGTGTATATATACCCCTGAAAAGTGCTATTATTCACCATATGATGATATGGGTTCTCTTGGAGATCCAAGAAGTTGGATTTCATATATGAACAGCAAAGATTGTTCATTAGAGTGGTGTCACAAACATAAATTGTATCCTCCACCGTCAACAGCACCACCTAATTCAAGGCCAAATTTTTCCCCTCTTATAATTGCCATGGCGGGGATCTTGGCCACGGCTTTTATTCTTGCAAGTTACTACTATAGCCGCCGCAGAGAGAACCCCAACGATGACGATGACGACTCAGTCCATGAAGCCGAAACCTGGTGGCATCAATACTACGTCTCAACAACCACCACAACCAGAATTGGCGGCGACTTAGATGAGGATGCGTTAAAGTGGATGGCAGTGTGGAAGTACAAGAGTGGCAAAAGCAGAGCCGATAGCTGTTGTGTTTGTTTGAATGAATTTGATGAGGGAGACAGTGTTAGGGCTTTGCCGAACTGCACCCATGCTTTTCATCCTCTTTGCATTGAGACATGGCTCAAATCTCACTCCAGCTGCCCTCTTTGTCGTCGTGCCACTGCCCCCGTAGCTCCGCCGTACGCGGTGGTGGAGGACCTCCCTCTCCCTGCAGGAACTGACACTACTACCGAAGAAGAAGAAGAAGAAAGCATACATAATAACGGTAACGTTGATAACAACAGCCTGCACAGAATAATTGATATAATAAGAGATGATCAACTTCAAGTAGGGGGTCATGATGATGATCAGTCCATTAATAAAACTATCAGGAAGTCAGTTTCTATGGACCCCCACTCATTCTCCTCGTCGTCTTCGTCATCAAAGAGCAGATACAGATCTCGTGGAGATCAAAGAAGCAGTAAGTCCTGCAGCTGTAAGAGAAAACATCTCTTGCATTCTGTATTCAGGGGCCCAATTGCTATGAAAAGGTCATTTTCCGGTAGTGCAAGATTCTCCCTTATTACCACAGCTAGTCACACAGCAAGGCACTAA 1020 0.4539 MLSINSTGCIYTPEKCYYSPYDDMGSLGDPRSWISYMNSKDCSLEWCHKHKLYPPPSTAPPNSRPNFSPLIIAMAGILATAFILASYYYSRRRENPNDDDDDSVHEAETWWHQYYVSTTTTTRIGGDLDEDALKWMAVWKYKSGKSRADSCCVCLNEFDEGDSVRALPNCTHAFHPLCIETWLKSHSSCPLCRRATAPVAPPYAVVEDLPLPAGTDTTTEEEEEESIHNNGNVDNNSLHRIIDIIRDDQLQVGGHDDDQSINKTIRKSVSMDPHSFSSSSSSSKSRYRSRGDQRSSKSCSCKRKHLLHSVFRGPIAMKRSFSGSARFSLITTASHTARH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01196 339 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 27 330 - -
Aip09g01196 339 MobiDBLite consensus disorder prediction 265 286 - -
Aip09g01196 339 Pfam Ring finger domain 149 193 IPR001841 -
Aip09g01196 339 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Aip09g01196 339 SMART ring_2 151 192 IPR001841 -
Aip09g01196 339 MobiDBLite consensus disorder prediction 211 234 - -
Aip09g01196 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 198 IPR013083 -
Aip09g01196 339 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 330 IPR044675 -
Aip09g01196 339 SUPERFAMILY RING/U-box 150 199 - -
Aip09g01196 339 MobiDBLite consensus disorder prediction 265 300 - -
Aip09g01196 339 CDD RING-H2_PA-TM-RING 151 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01196 Aip-Chr9 18332394 18333413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01196 24 193 C3H Transcription Factor Family AT3G03550 38.916 7.30e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01196 - - aip:107616926 583.563