Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01189 ATGACTGCTGAGTTGTCGTCCCTGGGTCTTTACAACCACACATTGCTTGAACCATACTCTTCTAATCTTCACGAATCTATGCCTTCATCACAATGCATTGCTTTACATTTACATGCTTTACATGGTTTCAATTATTGCGTTACGGACTCTTCGTCAAATGGCGGCATGCATGTAAACAACATGGCTAGCACCTTCAACAATGTCAAGGACATTGACGTGTCCCATGACAACTTGAGCTATAGGATCAAGGTACAATGGGTATATCAAACGCCAACTACAATTCCATTCTACACATCAACGGTGATTTTCAAGAGGTCAAGGATTTTCGAAAGAGGTGTACCTGCTGCAACTCAAGTTTTCCAAATACTGGGAGAACCGACGCATTCAATTGAAGAGGACCTACTTAACCATTTCATTTATAAGCCCATATCCAAGCTGAAGGATTCAATTGAGTGGTACAAGAGTTGCAAGCATTGCTTCCATTCTTTACAAGAAGCTGAGAACTCATACCACTGTGCTAGGTGTAAGACATACCCATCGTCTCACACCCCAAGGTTTAGCATAAAGATGCAAGTTGCTGAGGAGACTGATACGACTTCCTTCCTACTGTACGATAAGGAAGCGTCCAAATTCCTTGGTATATCTGCATCCGATCTCAGACTTGCACAACTAACCAGGGGTGGAGATGAAGAATATTCAATAGAGCTTAACTCACTGATGGGAAAGAAATTTCTGTTCAAAATTTCTGTGAAAATGGAAGATCTAAATGCATTCCAACCATGTAGCATAATTGTTACTAAGCTCTGTGGGGACAACTCAGTTATCACAAAATTTACTGCGAAGAATAGCTTAGACGAGGTTACAAAATTCTTCAAAGTTTTCGTGGTTGTCTTTGTATTTGAGTTGTATGTTTATTTTGTCTATGCCATGCAGCAAAATATGGGTATGCAGAATTCTGAACTGCTGAGCATGAACGCTAACTCTGCTGAAACCCCAAAGGGTACAATCTCTCCCTCTGCTGAGACTCTATCCCATGGAACAATTGATGCATTCTCAACTCCAAATAATAAAATCATCATTGGTGGGTGGTTTAAGAAGCTGATCGAACTGTACCCGGATTCTACCCATGCATCATCCTCCAAATGCAGGAAAGTGATAGAAGGTGCCACTGCAACCATTGTCGAGATTCATGATGATTAG 1200 0.4108 MTAELSSLGLYNHTLLEPYSSNLHESMPSSQCIALHLHALHGFNYCVTDSSSNGGMHVNNMASTFNNVKDIDVSHDNLSYRIKVQWVYQTPTTIPFYTSTVIFKRSRIFERGVPAATQVFQILGEPTHSIEEDLLNHFIYKPISKLKDSIEWYKSCKHCFHSLQEAENSYHCARCKTYPSSHTPRFSIKMQVAEETDTTSFLLYDKEASKFLGISASDLRLAQLTRGGDEEYSIELNSLMGKKFLFKISVKMEDLNAFQPCSIIVTKLCGDNSVITKFTAKNSLDEVTKFFKVFVVVFVFELYVYFVYAMQQNMGMQNSELLSMNANSAETPKGTISPSAETLSHGTIDAFSTPNNKIIIGGWFKKLIELYPDSTHASSSKCRKVIEGATATIVEIHDD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01189 399 CDD RPA1_DBD_C 143 256 IPR013955 -
Aip09g01189 399 SUPERFAMILY Nucleic acid-binding proteins 143 268 IPR012340 -
Aip09g01189 399 Pfam Replication factor-A C terminal domain 143 257 IPR013955 -
Aip09g01189 399 Gene3D - 132 287 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01189 Aip-Chr9 18147990 18152309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01189 148 265 Core DNA Replication Machinery Family AT5G08020 28.571 3.68e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01189 - - ahf:112707100 313.153