Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01165 ATGGACTCGCGAGCTCAGTATAATCCGCGCACCGTGGAAGAGGTTTTTAGGGATTTCAAGGGTCGCCGAGCAGGTCTCATCAAAGCCCTCACCACCGATGTTGAAGAATTCTACAACCAATGTGACCCTGAGAAGGAGAACTTGTGCTTGTATGGCTTTCCTAGCGAGCAGTGGGAAGTAAATTTACCCGCTGAAGAAGTTCCACCAGAGCTTCCCGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTGGTCGCTGTTCACAGCGATGCGTGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATTAATGAAGTGCCCACAATATTTGAAGTTGTTACTGGTGCAGCCAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCGAACCATAGTGGCAGCAAATCAAAGTCCAACTCTAAAGCACAGCGTGCTCCGGAACCACAGGGTAGGCAGCAAAAGGCATTGCAAGCAAAAGATGAGGACGATGAACTGGACGAGCAAGAAGACGATGAACACGGGGAAACCTTGTGTGGGGCATGTGGCGAGCATTATGGCACCGATGAATTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCATGGGAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGTAATAAGCGAACTCGCCCCTGA 765 0.4837 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINEVPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSNSKAQRAPEPQGRQQKALQAKDEDDELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01165 254 CDD PHD_AL_plant 200 250 IPR044104 -
Aip09g01165 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Aip09g01165 254 Coils Coil 174 194 - -
Aip09g01165 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Aip09g01165 254 MobiDBLite consensus disorder prediction 150 170 - -
Aip09g01165 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Aip09g01165 254 SMART PHD_3 200 248 IPR001965 -
Aip09g01165 254 PANTHER CPG BINDING PROTEIN 6 254 IPR045104 GO:0006355|GO:0042393
Aip09g01165 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Aip09g01165 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Aip09g01165 254 MobiDBLite consensus disorder prediction 145 192 - -
Aip09g01165 254 Pfam PHD-finger 201 250 IPR019787 -
Aip09g01165 254 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01165 Aip-Chr9 17441555 17446973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01165 5 253 Alfin-like Transcription Factor Family AT3G42790 75.100 1.31e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aip09g01165 Alfin 3.1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01165 - - gmx:100170700 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01165 09 17441555 17446973 Aip08g00290 08 2171815 2175375 ECH
Aip09g01165 09 17441555 17446973 Aip09g01165 09 17441555 17446973 ECH
Aip08g00290 08 2171815 2175375 Aip09g01165 09 17441555 17446973 PCT