Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01156 ATGCTCTCTGTTCTCAAGCAATATTTTGGGTTTTCAGATTTTCGGCCTTATCAGAAAGATGCCATTCAGAAAATTATTGAGAAAAGGGACTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAATCCTTGTGTTACCAGGTACCACCCTTGGTTGTTAGAAAGACTGGGATAGTTGTTAGCCCTCTAATATCATTGATGCAAGACCAGGTAATGGCTTTAAAACAGCGGGGCATCAAGGCTGAATATCTTGGAAGTGCTCAGAAGGATTCCACTGTTCAGAGAAAAGCCGAGCAGGGTCAATTTGACATTTTGTTCATGACTCCGGAAAAGGCTTGCACAGTTCCTACCAGTTTCTGGTCTAACTTGCTGAAGGAAGGAATTAGCCTTTTTGCTGTTGATGAAGCTCATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGAACTTACACAATTTACGTAGTGTTCTGCTAGATGTTCCTTTTGTTGGCTTAACTGCAACTGCTACTGAAAAGGTTCGATTTGACATTATCAACTCCCTGAAGTTGAAGAATCCATATGTTTTGGTTGGTTCATTTGATCGCTCCAATCTTTTCTATGGGGTCAAGCCATTTAGCCGTGGACAATCTTTTGTTGATGAACTTGTACAAGAAATTTCAAAAGTTGTTAGTAGTGGTTCAACTATAATTTACTGCACAACAATAAAGGACGTAGAGCAGATATCCAAGTCACTTGCGGAAGCAGGAATTGAGGCTGGAATGTACCATGGCCAAATGGATAAAAAATCTCGTGAAGAGTCTCATAGGTTATTTGTCAGGGATGAACTGCAAATCATGGTGGCTACTATTGCTTTTGGCATGGGCATAGATAAGCCTAACATAAGACAAGTGATTCATTATGGTTGCCCTAAGAGTCTTGAGTGCTACTACCAGGAAAGTGGGCGCTGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGTGACTTTTATTGCGGAGACCTAAAAACAGAAACCCAAAAAAGAGCTGTTATGGAGTCATTGCTCGCTGCTGAACGTTATTGTGTGCTTGCAACTTGCAGGAGAAAGTTCTTGCTTGAACACTTTGGGGAACAATATCCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGAAGGAGCGCGACATGTCTAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGAAAATGGGGTCTTAATATGCCCGTTGATATCTTGCGTGGGTCTCGAGCGAAAAAGATTCTCGATGCCCAGTTTGATAAGCTTCCCCTTCATGGACTTGGAAAAACTTATGCACCAAACTGGTGGAAAGCACTCGGGCATCAGTTGATCGCTCATGGTTATTTGAAGGAAACTGTCAGTGATGTGTACAGAACTATAAGTGTCAGTTTAAAAGGAGAACAATTTTTGGCCTCTTCTACACCTGATTATCAACCTTCCTTAGTTTTGTCACTGACTGCTGAGTTGCTCGGAGAAGAGGAAAATATGAGCACACAAGAAGAATCAAAAACTCTGGCCACTTCAGATTTAGACGGGTTTTCAGAGGTTGAGCGACAGCTCTACCAGATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACTGCTCCATATGCCATATGTGGCGATCAAACAATTAAGAAAATTACTCTTGTAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGACGGTGTGAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTAGAGTTATCCAGCAACTGTCACAAGGATTAAACTTATCATTGGACGGGGAAGCTAATTTACTAAATAACGAAGTAAGGAAATTATCTACAGTGTCAGTAAAAAACAGTTCAAAGAAGTTGACACCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAGCAAACTGTTGCTGAATATCTGTTGGAAGCTGCACAAGAAGGATTACCTTTTGATTGGAGTAGATTCTGTGAGGTGATAGGACTGACGCAAGAGATCGAATCTGAAATTCAGGGTGCTATTTTAAAGGTTGGATCTAAAGATAAGCTGAAGCCTATAAAAGATGAATTGCCAGAAAATGTCACTTATCAGCACATCAAGACTTATTTGACAATGCAAAGCTGTGGTGTATCCAAAGATGACATCCAGACTCAGAAAGACAGCGAATCGGAAATACAGCAAGTGGAAACGCATTGTGAAGCCAACATTTCTGACCACAGCTTGATGGAAAAATGTGACTTGGAAATGGATAAAGTAGCATCTAGACCAGTGGAATTCACAACCAAACGTCAGAAAGTCAGTGACATGAAGGAAATAAATTCAACTGACTTCAAAGCTACTGAGAATTCTATATTAGAGTGGCTAAAGCACCATGATGAAGGGGCTACTTTGGTTGAAATTCAAGGGCACTTCAACGGGTCTGGCGAAGATTGTGTGGTTGATCTGCTGAATTTATTGGAAAGTGACTTTTTAATTTATAAAAAAGGTGGCATGTATAGGGTCCTGTAA 2643 0.4052 MLSVLKQYFGFSDFRPYQKDAIQKIIEKRDCLVVMATGSGKSLCYQVPPLVVRKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDSTVQRKAEQGQFDILFMTPEKACTVPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKNLHNLRSVLLDVPFVGLTATATEKVRFDIINSLKLKNPYVLVGSFDRSNLFYGVKPFSRGQSFVDELVQEISKVVSSGSTIIYCTTIKDVEQISKSLAEAGIEAGMYHGQMDKKSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKSLECYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKTETQKRAVMESLLAAERYCVLATCRRKFLLEHFGEQYPADRCGNCDNCTVSKKERDMSREAFLLMACIHSCKGKWGLNMPVDILRGSRAKKILDAQFDKLPLHGLGKTYAPNWWKALGHQLIAHGYLKETVSDVYRTISVSLKGEQFLASSTPDYQPSLVLSLTAELLGEEENMSTQEESKTLATSDLDGFSEVERQLYQMLLEERLKLARSVGTAPYAICGDQTIKKITLVRPSTKARLANIDGVNQHLVTKYGDHFLRVIQQLSQGLNLSLDGEANLLNNEVRKLSTVSVKNSSKKLTPAKFEAWKMWHEDGLSIQMIANFPGRSAPIKEQTVAEYLLEAAQEGLPFDWSRFCEVIGLTQEIESEIQGAILKVGSKDKLKPIKDELPENVTYQHIKTYLTMQSCGVSKDDIQTQKDSESEIQQVETHCEANISDHSLMEKCDLEMDKVASRPVEFTTKRQKVSDMKEINSTDFKATENSILEWLKHHDEGATLVEIQGHFNGSGEDCVVDLLNLLESDFLIYKKGGMYRVL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01156 880 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 3 454 IPR004589 GO:0004386|GO:0006310
Aip09g01156 880 Pfam RQC domain 400 496 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aip09g01156 880 Gene3D - 1 195 IPR027417 -
Aip09g01156 880 Gene3D HRDC domain 537 618 IPR044876 -
Aip09g01156 880 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 5 741 - -
Aip09g01156 880 SMART hrdc7 539 619 IPR002121 GO:0003676
Aip09g01156 880 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 741 - -
Aip09g01156 880 Pfam RecQ zinc-binding 347 396 IPR032284 -
Aip09g01156 880 Gene3D - 197 397 IPR027417 -
Aip09g01156 880 SMART ultradead3 10 205 IPR014001 -
Aip09g01156 880 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Aip09g01156 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Aip09g01156 880 SMART RQC_2 403 507 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aip09g01156 880 ProSiteProfiles HRDC domain profile. 539 619 IPR002121 GO:0003676
Aip09g01156 880 CDD DEXHc_RecQ 2 196 - -
Aip09g01156 880 SUPERFAMILY HRDC-like 538 614 IPR010997 GO:0000166|GO:0044237
Aip09g01156 880 Gene3D - 398 523 IPR036388 -
Aip09g01156 880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 366 IPR001650 -
Aip09g01156 880 SUPERFAMILY "Winged helix" DNA-binding domain 394 500 IPR036390 -
Aip09g01156 880 CDD SF2_C_RecQ 197 331 - -
Aip09g01156 880 Pfam Helix-turn-helix domain 652 748 IPR029491 -
Aip09g01156 880 SMART helicmild6 241 322 IPR001650 -
Aip09g01156 880 Pfam Helicase conserved C-terminal domain 216 321 IPR001650 -
Aip09g01156 880 Pfam HRDC domain 543 609 IPR002121 GO:0003676
Aip09g01156 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01156 Aip-Chr9 17263166 17274368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01156 9 338 Eukaryotic Initiation Factors Gene Family AT3G19760 21.512 6.00e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01156 K03654 - gmx:100797777 1405.58