LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g01142	ATGGCACATGCATCTTTTTCCCGAGTATCTCAGATGGCATATGTTATATTTGTGTGTCTCTTGCTTATTCTGAAACCGAAGGGTGTGGCTTCTTCTTCCGAAAATGCCCTTAAGATAAAGTATGATGTCTTTGTTAGCTTCAGAGGCCCGGACATCCGACGAGGTTTCCTTAGTCATTTGGTTGACGCGCTTTCTAGAAAGAAAATTAACGGCTTTGTAGATGATAAAATTGAGGTAGGAGATGAAATACCAAAATCACTGATTAGAGCAATCAAGGCATCATTAATTTCACTAGTTATATTTTCACCAAACTATTCTTCTTCACGCTGGTGTTTGGAGGAACTTGCAAAAATAGTTGAGTGCAGAGAAAAAGAAGGCCAGTTTGTGCTACCAGTTTTTCTTGACGTAGATCCCTCAGATGTGCGGCATCAAAGAGGATCCTACGGAGACGCATTTATTAAACATGAGAAGAAATATGACTTGGTCAAGGTTCAACGTTGGAGAACTGCTTTACAAAGAGCTGCTAATTTATCTGGATTACATTCAACAAAATACAGGAATGACTATGGGCTCCTTGAAGCAATCATCAAACATCTGATAAAGAGATTGAATCATGAGCAGAAATATATCTCAAGAGGGCTTATTGGAATTGGCAAATCAATTGCACTCTTAGAGTCAGAATTGAATCCGGAGTTAGGAGACGTGCGTGCTTTGGGAATTTGGGGAATGGGGGGCTTGGGTAAGACAACTCTTGCATGGGAAGTGTTTAACAGCGTAAACTCACAGTACGAAGGTTCTTGTTTTCTGGGAAATGTAAGGGAAAGTTCAGCCAGGGAAGGAATATTTTCTTTGAAGAGCAAACTTTATTCTGAACTCATAGGTGAACCAGACTTAAAAATTGATAGCTCAAATGGATTGCCCCCTTTTCTTGAGAAAAGACTTGGTCGAATGAAGGTAATCATTGTTCTAGACGATGTCAATGATTTTCGGCAACTGAAAATACTATTTGGAACAAGGGAACAATTTGGACCAGGTAGTAGAATCATTGTAACATCCAGAGATAAGCAAGTGCTCCATACAGAAGTTGATTTTATCTACGAAGTTAAGCCATTACAAGTTGATGAGGCGCTTCGACTTTTCAATTCGATTGCCTTCAAACATGAACATCGTGATCTTGAGATGGAATTTCATGAGCAATCAAAAAAGGTGATCGAGTATGCCAAAGGTGTTCCATTAGTCCTTGAAGTTCTGGGACACCATGTCCATGGAAAAGGGAAAGAAATATGGGAAAGCCTgttagagaagcttaaaaatatgccagacaaagaggtccataatgtgatgaaactcagttatgatgatcttgatcgccatgagaaaaagatattcttggatattgcttgtttttttAAATGGTTACATGTGACAGAGGATTATATAAAACTACTTTTGAAGGATGAGATCAATTCTGTGGCTTTTGTGTTAGAAAGGTTAAAAGATAAAGCCCTCATAACTGTTTCTGAAAGAACTATTGTATCGATGCATGACATTATTCAAGAAACAGCATACGAGATTGTTCGTCAAGAATCTATTGAAGACCCTGGAAAACGAAGCCGATTATGGGGTTCTAATGACATTTATCAAGTGCTAAGAGGTGATAAGGGGAGTGAAGCCATTAGAAGCATCTCCGCCAAGTTGCCATTGCTTAATAAGAAGCTGCAGCTAAGCCCTCAAGTATTTGCAAAGATGAGCAACCTACACTTTTTGGAACTTTTAGCTCCTTACACGTGTCCTTCTTATTTCCCACAAGATCAGATGAGTTTGTATTTTCCTGAAGGGCTTGAGTCTTTGCCTAATGAACTAAGGTTTCTTCTTTGGATGCACTACCCTATGGAAGCCTTGCCAACTCAGTTTTCGGCTGAAAATCTTCAAATACTCTCCTTGCCCGTTAACCGAGTGAAAAAACTTTGGCATCAAGAGCAGAATCTTCGAAGTTTAAAGAGAGTTAGCCTTCTATGTTCCAATCAATTAACAGAGTCACCAGACTTTTCAAATGCAACAAATCTTGAAGTGCTTAATCTCGGTTGGAGTTCAAAGTTGATTCACGTACATCCATCTGTTTTCTCTTTAGAGAAGCTCACGACTTTGTACCTTGCAAACTGCGTTTCCCTTACAAGCCTTATAAGTGATACTCATTTAAGGTCCCTTCGCTCTCTCTATCTCGATGGCTGCACAGCACTGAAGGAATTTTCTGTTATTTCAATGAATATGGTAAAGCTGTATTTAGATCACACAGGGATCAAACAACTGCCTGCATCTATTGGAATTCAAAGCAAACTTGAAGTGCTAAGTGTAGCAAACAGTACTATTGAGTACTTGCCTGAAAGCATTAAGCACCTCTTGAGGCTGAGAAGCTTAAATTTAAGGGATTGCAGGGAGCTTCAAACTCTACCGGAGCTTCCCCCTAACATCGAAGACCTAAATGTTGAAGGTTGCATATCACTGAAGACCGTGTTGTTCCCTGTGACTGTAGCTGAACAAATGAAGGAAGAAAGGAAAAAGGTCGCATTATGGAATTGTGTGGCATTGGATCAACACTCTCTTGAGGCTATTGGCTTGAATGCACAAATCAACATCTTGAAATTTGCACATCAACATTTGTCCAGACTTGAAAGTGACAGTTACCAAGATTATGATGCTGATGGAGCCACCTATGTGTATCCGGGAAGCAGAATTCCGAAGTGGTTGTTGCACAGAACAATTGGCGATCACATAACCATTGATGTCCCATTTGGTCTGCCTTCCAATCAGTTAGGCTTCATTTTTGCTTTCATTGTTCCGAAAGTTGCATCTGAAGGTTTGTTTTTAAACTTTAGCCTCAGTGTGGGTGATGATGAGGATGAAGGGAACAGTATCAAGTTGCGCTTGCCTAGGCCAGGTCAAGAAATTGCATCGGACCACGTGTATCTGATGTATGACGTGGCATGCTCTAACTACCTAAGTAGTAAAGCCAAATCTCAGGCACAGTTTAAAATTAAGGTTAGTGTGGCATCAGAGTACACGCCGTTGCTATTGAAAGGATTGGGGGTCAGCCTTGTCATTGTGGCAGAATATCAGAGTTTCGTTCAACAAATGAAATGGCTTGACACAACTTCAATAACAAGAGAAACGGATTCATATAATTGTGAACTTCGATATCAGAATTGTTCTCTTGAATTTGGGAAATTCTATGGTACCCAGTGCTTATTTCAACAACATGTGCACGCGCTTGGAGCAGGCCAAGGAGGGGTGTATTAG	3297	0.3897	MAHASFSRVSQMAYVIFVCLLLILKPKGVASSSENALKIKYDVFVSFRGPDIRRGFLSHLVDALSRKKINGFVDDKIEVGDEIPKSLIRAIKASLISLVIFSPNYSSSRWCLEELAKIVECREKEGQFVLPVFLDVDPSDVRHQRGSYGDAFIKHEKKYDLVKVQRWRTALQRAANLSGLHSTKYRNDYGLLEAIIKHLIKRLNHEQKYISRGLIGIGKSIALLESELNPELGDVRALGIWGMGGLGKTTLAWEVFNSVNSQYEGSCFLGNVRESSAREGIFSLKSKLYSELIGEPDLKIDSSNGLPPFLEKRLGRMKVIIVLDDVNDFRQLKILFGTREQFGPGSRIIVTSRDKQVLHTEVDFIYEVKPLQVDEALRLFNSIAFKHEHRDLEMEFHEQSKKVIEYAKGVPLVLEVLGHHVHGKGKEIWESLLEKLKNMPDKEVHNVMKLSYDDLDRHEKKIFLDIACFFKWLHVTEDYIKLLLKDEINSVAFVLERLKDKALITVSERTIVSMHDIIQETAYEIVRQESIEDPGKRSRLWGSNDIYQVLRGDKGSEAIRSISAKLPLLNKKLQLSPQVFAKMSNLHFLELLAPYTCPSYFPQDQMSLYFPEGLESLPNELRFLLWMHYPMEALPTQFSAENLQILSLPVNRVKKLWHQEQNLRSLKRVSLLCSNQLTESPDFSNATNLEVLNLGWSSKLIHVHPSVFSLEKLTTLYLANCVSLTSLISDTHLRSLRSLYLDGCTALKEFSVISMNMVKLYLDHTGIKQLPASIGIQSKLEVLSVANSTIEYLPESIKHLLRLRSLNLRDCRELQTLPELPPNIEDLNVEGCISLKTVLFPVTVAEQMKEERKKVALWNCVALDQHSLEAIGLNAQINILKFAHQHLSRLESDSYQDYDADGATYVYPGSRIPKWLLHRTIGDHITIDVPFGLPSNQLGFIFAFIVPKVASEGLFLNFSLSVGDDEDEGNSIKLRLPRPGQEIASDHVYLMYDVACSNYLSSKAKSQAQFKIKVSVASEYTPLLLKGLGVSLVIVAEYQSFVQQMKWLDTTSITRETDSYNCELRYQNCSLEFGKFYGTQCLFQQHVHALGAGQGGVY	1098

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g01142	1098	Gene3D	-	371	456	IPR042197	-
	Aip09g01142	1098	ProSiteProfiles	TIR domain profile.	39	203	IPR000157	GO:0007165
	Aip09g01142	1098	SUPERFAMILY	Toll/Interleukin receptor TIR domain	31	179	IPR035897	-
	Aip09g01142	1098	Pfam	NB-ARC domain	236	453	IPR002182	GO:0043531
	Aip09g01142	1098	SUPERFAMILY	"Winged helix" DNA-binding domain	443	550	IPR036390	-
	Aip09g01142	1098	PRINTS	Disease resistance protein signature	237	252	-	-
	Aip09g01142	1098	PRINTS	Disease resistance protein signature	313	327	-	-
	Aip09g01142	1098	PRINTS	Disease resistance protein signature	407	421	-	-
	Aip09g01142	1098	PRINTS	Disease resistance protein signature	798	814	-	-
	Aip09g01142	1098	Gene3D	Ribonuclease Inhibitor	559	725	IPR032675	-
	Aip09g01142	1098	Gene3D	Ribonuclease Inhibitor	731	855	IPR032675	-
	Aip09g01142	1098	SUPERFAMILY	L domain-like	571	860	-	-
	Aip09g01142	1098	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	30	1050	IPR044974	GO:0006952
	Aip09g01142	1098	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	30	1050	-	-
	Aip09g01142	1098	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	466	IPR027417	-
	Aip09g01142	1098	Gene3D	-	183	365	IPR027417	-
	Aip09g01142	1098	Gene3D	-	25	174	IPR035897	-
	Aip09g01142	1098	Pfam	TIR domain	40	208	IPR000157	GO:0007165
	Aip09g01142	1098	SMART	till_3	40	177	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g01142	Aip-Chr9	16872151	16884112	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g01142	41	819	WRKY Transcription Factor Family	AT4G12020	33.585	7.91e-108	369

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g01142	-		-	ahf:112710431	1972.21