LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip09g01135	ATGAGAAGGAAACATCATCGAGCGTGGACTCTTGTTGAGGTAATGAAGTTGGTTGACGGTGTATCACGGTGTGGCGCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCATCACACTCGTATCGTACCTCTGTCGATCTTAAGGACAAGTGGAGGAATTTGCTCAAGGCTAGCTTTGCTCAGGCACCTGCAGATGAAGGGATGAACGTGCGGAAGCATGGTACAGCGCCAATCCCGGAACCGATTCTGCTACGAGTACGAGAGCTTGCGCAGATGAATTCTCAGGCACCTCCAAATTTTAGCTCAAGCAAGTTTTTAGCTGGTGCCGGAAATGCACTCGGAGATAGACCAGGGTACTTGTAG	366	0.5027	MRRKHHRAWTLVEVMKLVDGVSRCGAGRWSEIKRLSFSSHSYRTSVDLKDKWRNLLKASFAQAPADEGMNVRKHGTAPIPEPILLRVRELAQMNSQAPPNFSSSKFLAGAGNALGDRPGYL	121

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip09g01135	121	PANTHER	TRF-LIKE 3	1	119	-	-
	Aip09g01135	121	PANTHER	MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	1	119	-	-
	Aip09g01135	121	SUPERFAMILY	Homeodomain-like	3	62	IPR009057	-
	Aip09g01135	121	CDD	SANT_TRF	7	57	-	-
	Aip09g01135	121	ProSiteProfiles	Myb-like domain profile.	9	56	IPR001005	-
	Aip09g01135	121	Pfam	Myb-like DNA-binding domain	7	56	IPR001005	-
	Aip09g01135	121	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	60	IPR017930	-
	Aip09g01135	121	SMART	sant	5	58	IPR001005	-
	Aip09g01135	121	Gene3D	-	1	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip09g01135	Aip-Chr9	16656203	16657136	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip09g01135	9	66	Single Myb Histone (SMH) Gene Family	AT1G17520	41.667	3.51e-06	42.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Aip09g01135		Myb_DNA-binding	7.2e-08	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip09g01135	-		-	gmx:100782501	211.075

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip09g01135	09	16656203	16657136	Aip09g01135	09	16656203	16657136	ECH