Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01124 ATGGGAAGGAGTCCTTGCTGTTCTAAGGAAGGTTTGAACAAAGGAGCATGGACAGCTATGGAAGACAAAATTCTCACAGACTACATTAAGATTCATGGTGAAGGAAAATGGAGACACTTACCCAAAAGAGCAGGGCTTAAGAGATGCGGAAAAAGTTGCAGGCTGAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGAAATATTACTCACGATGAAGAAGAGCTTATAATCCGCCTTCACAACCTTCTCGGAAACAGGTGGTCCTTGATTGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTATTGGAATACCAACATTGGAAGAAAGCTTCAAAATGGTACCCAAAATTGTTCATCATCAAACTTGCTCCAACTGGATCCGAACCCAAATCCGAAAACCCGAGAATGGCCATGCCCTAATAATTACCTACAAAATAATATTGGTTCTTGTTTGGTCCAGACTAAAGCCACAAGATGGCCTAATAATAATAAGGTCATACTCACCAAAGAAATTATCACAAAACAAAATAATGAAGGCATGGTCCATAATCATCACATTAATAATAATGTTAATGCCACGGATTATAAGATGAAGGGTTCATCGTCTTCGTCTCCGGTGTCACCATCTTCAGAGAGTAACACCAATATCAACGACAACAACAACAATAACAACAACAAAAATATCGAGGAAGCGTTGGATTTCATGGCGGATTTTCAAACGGAGGGAAATAATCTTTATTCGGAGCTTCTCAAGATGGACTTTGCAGAAGCATCATCATGTTTGGAAAATAACATGTTGGAAGGAAGTGGTAATAATAATAATAATAATAACAAACATATTATTAGCACAGTTGATAAAGCAGTAGGGCAGTTATATCCAAAATTATCATTCAATGACACCCATTTCCATTGGCCTTGGAGTGATTCATTGTATGATACGGATTTTGATTTTCAACACATGGAAAATATTATAGAGTCTGGATTTGATTGGCTTTGA 1014 0.3797 MGRSPCCSKEGLNKGAWTAMEDKILTDYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITHDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTQNCSSSNLLQLDPNPNPKTREWPCPNNYLQNNIGSCLVQTKATRWPNNNKVILTKEIITKQNNEGMVHNHHINNNVNATDYKMKGSSSSSPVSPSSESNTNINDNNNNNNNKNIEEALDFMADFQTEGNNLYSELLKMDFAEASSCLENNMLEGSGNNNNNNNKHIISTVDKAVGQLYPKLSFNDTHFHWPWSDSLYDTDFDFQHMENIIESGFDWL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01124 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip09g01124 337 MobiDBLite consensus disorder prediction 198 232 - -
Aip09g01124 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip09g01124 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip09g01124 337 CDD SANT 16 61 IPR001005 -
Aip09g01124 337 SMART sant 66 114 IPR001005 -
Aip09g01124 337 SMART sant 13 63 IPR001005 -
Aip09g01124 337 Gene3D - 70 132 - -
Aip09g01124 337 PANTHER TRANSCRIPTION FACTOR TT2 1 280 - -
Aip09g01124 337 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 280 - -
Aip09g01124 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip09g01124 337 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Aip09g01124 337 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aip09g01124 337 CDD SANT 71 112 IPR001005 -
Aip09g01124 337 Gene3D - 14 66 - -
Aip09g01124 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01124 Aip-Chr9 16468283 16472848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01124 1 116 MYB Transcription Factor Family AT2G16720 77.586 2.15e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip09g01124 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01124 K09422 - gmx:100809225 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03405 01 137011795 137013109 Aip09g01124 09 16468283 16472848 ECH
Aip09g01124 09 16468283 16472848 Aip09g01124 09 16468283 16472848 ECH