Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01121 ATGAACAGATACATTCCCTACAGATACAAGAATAATGGAACACATGACAAAGAAATAGAGGTCCTTGTGATTAGTGCTCAGAAGGGCAAAGGAATGCAGTTCCCAAAGAACCTGGAAGGCCAGAACCCTAAAAGCTTCAAAGAACCCCAATCCTCACCCCAGCACTCCGCGAAGAACCCCAGCCCTCCGAAGAACATCGTCGGCACTCGCAATGCCTCCGTCGTCACTCTCTCTTCTGGCACTTCCACCATCGCTGCTCCTTCGGCGGGAGCGAAGAGGGGTTCTCCACTTGTTCCGGAGCGCTCTTCTCACTCCTCGATCCCAAGCCCTAGGTCTCGCTCTTCTCTTGTCTTCATTCTCACCATTCCCAATCACCTCTCCTTTGATGACCTCAATCGCTGGTGCGGACCCCTCCTCCACCATCTCCACCGCCTCCTCTTCATCAGGGTAGGTATAGGTGAAATAAAGAAGATGGCATTTCCAGGAGCAAATGAATCCATTTCAGGAGCAAGTTCACCACAGAGAAAGATAGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCATATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGTCTTTATGAATATGCTAATAACAGGTAG 714 0.486 MNRYIPYRYKNNGTHDKEIEVLVISAQKGKGMQFPKNLEGQNPKSFKEPQSSPQHSAKNPSPPKNIVGTRNASVVTLSSGTSTIAAPSAGAKRGSPLVPERSSHSSIPSPRSRSSLVFILTIPNHLSFDDLNRWCGPLLHHLHRLLFIRVGIGEIKKMAFPGANESISGASSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01121 237 PANTHER MADS BOX PROTEIN 173 236 - -
Aip09g01121 237 ProSitePatterns MADS-box domain signature. 179 233 IPR002100 GO:0003677|GO:0046983
Aip09g01121 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 186 233 IPR002100 GO:0003677|GO:0046983
Aip09g01121 237 MobiDBLite consensus disorder prediction 38 68 - -
Aip09g01121 237 Pfam BRCA1-associated protein 2 110 150 IPR011422 -
Aip09g01121 237 MobiDBLite consensus disorder prediction 32 68 - -
Aip09g01121 237 ProSiteProfiles MADS-box domain profile. 177 237 IPR002100 GO:0003677|GO:0046983
Aip09g01121 237 CDD MADS_MEF2_like 178 236 IPR033896 GO:0000977|GO:0045944
Aip09g01121 237 MobiDBLite consensus disorder prediction 84 111 - -
Aip09g01121 237 SUPERFAMILY SRF-like 178 236 IPR036879 GO:0003677|GO:0046983
Aip09g01121 237 Gene3D - 189 237 IPR036879 GO:0003677|GO:0046983
Aip09g01121 237 PRINTS MADS domain signature 179 199 IPR002100 GO:0003677|GO:0046983
Aip09g01121 237 PRINTS MADS domain signature 199 214 IPR002100 GO:0003677|GO:0046983
Aip09g01121 237 PRINTS MADS domain signature 214 235 IPR002100 GO:0003677|GO:0046983
Aip09g01121 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 173 236 - -
Aip09g01121 237 SMART madsneu2 177 236 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01121 Aip-Chr9 16373462 16377523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01121 162 236 MADS-box Gene Family AT2G42830 81.333 1.83e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip09g01121 SRF-TF 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01121 K09264 - aip:107624459 242.662