Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01120 ATGAGCAATTGGTTGGGGTTTTCTCTGACTCCACACCTGAGGATTGATGAAGAATTTGAGAGACAAAATGAAGAGCGTGGAAATGGAGGATCTTATCCTCCTCCTGTGATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGACTCCTTTTCTCGCTCTGCTGCACCTCATGAATGGAGATATGAGAATGCAATGGGAAGTGGAAATTCAAATGAAGAAGGTCCGAAGCTTGAAGACTTCTTAGGATGCTACTCAAATCCATCACCACTTGCGGAAACCAAAGCATTTTGTCAGCAAAACCGAAACCAAAACCAACAAAACAACTTCTCAAAGATCAATATGAATGTTGAAACATCATCGTCACTGTTCCAATCATTCAATCCCTACAATGATAGCAGAAGCAACCACAACCATCATCATCATCATCATCATGCTCTCATAGCCGGCAACGGGGTTTACAAGTCATCATGGTTGGCACAAACTTGTTGCTCATCTTCATCTTCAGCGGAGGCAAATCAAAATAGTAGTAATAATAATAATAATAATGGTGAGTGCAATTTCCAATCTCTGTCACTGACTATGAGTCCGAGCAGTGTTCAACAACAACAACAAAATGGTGGGGTGGTGGTGGTGAGTGGAATGAACCACCAAGTAGTGCTTCATAATCAACATAATCAGGTTGATGATGACACTCGTAAAAGATCCATTGCTAAATCTCAAGGGAGAGAACCGGTGCCTCGAAAGTCTATTGACACTTTTGGCCAGAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACGGGTAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGACAAACAAGAAAAGGAAGGCAAGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGAGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGAACAGACAAGAATTTGTCGCCAATTTGAGAAGGCACCATCAACATGGAAGGTGGCAAGCTCGTATAGGAAGGGTTGCAGGCAACAAGGACTTGTATCTTGGTACATTTAGTACACAAGAAGAAGCTGCGGAAGCTTATGACATTGCAGCAATCAAGTTCAGGGGAACAAGTGCCGTGACCAATTTCGACATAAGCAGGTATGACGTGAAGAGGATTTGCTCAAGTTCAACCCTAATTGCCGGAGACCTTGCGAAACGGTCTCCTAAAGACTCAGCTCTAGCCACCGCCGAGGACTTCAACTCATCCGGTTCGGCCGCCACACCTTCTCAACCAACTCCACTGGCAATAACTGATGGTGAACAACACTCTGATGAGTTGTCCAACATGGTGTGGAATGGCAACAGTGACGAGCAACCGCAGAATGAGAGCGGAACCAGCAACAGCAATGTCGCTGGTCCATTGTCGCAGCAGGTTTCGCCAAGCAACAAGAACGAGGCGAACCCGCCGCAAAGCCCCAATGAATTTGGGGTCAGTGGAACAGATTATGGACATGGATATTTCACTCTGCATGGACCACCAAAATATGATGATGGAAACAATGAAAATGAACACAGGATTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1683 0.4439 MSNWLGFSLTPHLRIDEEFERQNEERGNGGSYPPPVMPLRSDGSLCVADSFSRSAAPHEWRYENAMGSGNSNEEGPKLEDFLGCYSNPSPLAETKAFCQQNRNQNQQNNFSKINMNVETSSSLFQSFNPYNDSRSNHNHHHHHHHALIAGNGVYKSSWLAQTCCSSSSSAEANQNSSNNNNNNGECNFQSLSLTMSPSSVQQQQQNGGVVVVSGMNHQVVLHNQHNQVDDDTRKRSIAKSQGREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMNRQEFVANLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSALATAEDFNSSGSAATPSQPTPLAITDGEQHSDELSNMVWNGNSDEQPQNESGTSNSNVAGPLSQQVSPSNKNEANPPQSPNEFGVSGTDYGHGYFTLHGPPKYDDGNNENEHRIGNLGLVNQVPMFALWNE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01120 560 SUPERFAMILY DNA-binding domain 348 402 IPR016177 GO:0003677
Aip09g01120 560 MobiDBLite consensus disorder prediction 431 514 - -
Aip09g01120 560 CDD AP2 348 402 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 MobiDBLite consensus disorder prediction 431 532 - -
Aip09g01120 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 485 - -
Aip09g01120 560 PRINTS Ethylene responsive element binding protein signature 382 402 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 MobiDBLite consensus disorder prediction 224 246 - -
Aip09g01120 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 39 485 - -
Aip09g01120 560 Pfam AP2 domain 260 315 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 Pfam AP2 domain 346 392 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 SMART rav1_2 260 329 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 SMART rav1_2 347 406 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 ProSiteProfiles AP2/ERF domain profile. 339 400 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 ProSiteProfiles AP2/ERF domain profile. 260 323 IPR001471 GO:0003700|GO:0006355
Aip09g01120 560 MobiDBLite consensus disorder prediction 224 250 - -
Aip09g01120 560 SUPERFAMILY DNA-binding domain 259 325 IPR016177 GO:0003677
Aip09g01120 560 Gene3D AP2/ERF domain 259 325 IPR036955 GO:0003700|GO:0006355
Aip09g01120 560 Gene3D AP2/ERF domain 345 402 IPR036955 GO:0003700|GO:0006355
Aip09g01120 560 CDD AP2 259 325 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01120 Aip-Chr9 16283764 16289541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01120 1 429 AP2-EREBP Transcription Factor Family AT1G72570 47.939 2.66e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip09g01120 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01120 K09285 - gmx:100809762 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01120 09 16283764 16289541 Aip09g01120 09 16283764 16289541 ECH