Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01071 ATGAATGAGAACAAGCTTGATTTTCATTCTGAATATGGCAACCGTTCTTCTTGTCAATATTTTGGTATTAGACAACAACCTTGGAACATGGGACCATGCAATAACCAACCCCTCGGCGCGACTTGCGTCAGCGTTGGAGTTGGCAGAGGAAGAGGAGGAGGAGGAGGAGAACAAGAAGTAGTACTACCATACTCGGCTCAAGCCAAACCATCTAGCACCATCATAAGCCGATTCGAGTCGCCGGCTTCGGCCTTTTACGCGACGGAAATCTTCATGGGGTTCCCACAATATGATTCCCATCAAGTTGGTAATCCATCCAATTTGATGCCTCATCAACTCTCCATCAAGAACATTAATAATGATATGGAGTTCCCTCTCTATCAATCTTCAAAGGAAAGCCTCTTCTTTGATTCATCAGTTAATGACCAAAATAGCCCCAACAACTTTGAGTTGCCAAACACCTTGCAAGCAATAAAATCTCAATTGAATGGTGATCAATGTAATGGATCACCTGAAAAATCTAATAAAATTCCATGTGGGAATTTTCCTGCCAGCAATTTCCTTCCTATTGAACAACATAAGTTGTTCAATGATGATGCTGCCCCAGTCACTAGGAGCATATCAATTCCTAAAGCAAATCAAGAATCTACGGTTGCTTGTGGCTCATTCAATTCCCCTGTTCAACAGCTGAGTTTCTCTTCTCCTCAAGAGAAGCTTTCTCCGACAATTTCAGCCGGAAACCTTGTCGGTAATGGACCGATAGCATCGAGTAAGACGCGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAATGTGTCAATAGACTAGGAGGCGCAGAGAAGGCGACGCCGAAAGCGATATTAAGGCTGATGGATTCAGATGGATTGACAATCTTCCATGTTAAGAGTCATTTGCAGAAATACAGAATTGCAAAGTATATGCCAGAATCAACTCAGGGGAAATCTGAGAAAAGAACCAGTGCAGAGAATGTGCATCTTGATGTCAAAGCTGGCTTGCAGATTAAAGAGGCACTTCAGCTGCAATTGGATGTGCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAGTTGCAAATTGAAGAACAAGGAAAGCAGCTGAAGATGATGTTTGACCGACAGCAGAAGTCAAATAATAGTGAAAGAAGTTCTAAAGATAATAATAATGATGATAATGAGGTTACAATTTTAGAAGGGACTGGAATTTCCCACTTCCCTTCAAAGATAAGTTAG 1266 0.4163 MNENKLDFHSEYGNRSSCQYFGIRQQPWNMGPCNNQPLGATCVSVGVGRGRGGGGGEQEVVLPYSAQAKPSSTIISRFESPASAFYATEIFMGFPQYDSHQVGNPSNLMPHQLSIKNINNDMEFPLYQSSKESLFFDSSVNDQNSPNNFELPNTLQAIKSQLNGDQCNGSPEKSNKIPCGNFPASNFLPIEQHKLFNDDAAPVTRSISIPKANQESTVACGSFNSPVQQLSFSSPQEKLSPTISAGNLVGNGPIASSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPESTQGKSEKRTSAENVHLDVKAGLQIKEALQLQLDVQRRLHEQLEIQRKLQLQIEEQGKQLKMMFDRQQKSNNSERSSKDNNNDDNEVTILEGTGISHFPSKIS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01071 421 MobiDBLite consensus disorder prediction 384 421 - -
Aip09g01071 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 50 405 IPR044848 GO:0003700
Aip09g01071 421 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Aip09g01071 421 MobiDBLite consensus disorder prediction 389 403 - -
Aip09g01071 421 Pfam MYB-CC type transfactor, LHEQLE motif 341 388 IPR025756 -
Aip09g01071 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Aip09g01071 421 Coils Coil 344 364 - -
Aip09g01071 421 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 50 405 - -
Aip09g01071 421 Pfam Myb-like DNA-binding domain 262 311 IPR001005 -
Aip09g01071 421 Gene3D - 257 316 - -
Aip09g01071 421 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01071 Aip-Chr9 15222920 15226321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01071 236 395 G2-like Transcription Factor Family AT3G04450 51.190 2.08e-49 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip09g01071 Myb_DNA-binding 2.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01071 - - aip:107619706 822.772