Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01012 ATGACCGAGGAAAGAATTTCGTTTAGAAAGAAGGCAGAGAAAAAGGAGAAGGGACCCGAGTTCTCTGAATTTGTTGGTTCTGATTTTATACATCCCAAGGATGCTGTCCCGATCGAAAGCATACAGGAGTTTGACGAGACTGTTGAAGGGACTGGAAACAAGGGCAGGGTGTGTGTTGTTAATGATATTGTTTTGGGTGATATAGAGGAGATGATGGGAATAGAGGAAGTTGAGGATACTTCGAGGACACTGCTGCAGGACAGGTGTAACGATGCAGATAAAGAGCAACAAAGGATAATGGACGAGTTGGAACTGGTTGTGAATGGAACACAAAATATCATTTGTGATAGTGGTTTAATCTCTTTGAGTGCAGGGTTAGGCGAGGAACAGAACGGCAGCAGGGCAGTTGAGCCGATGGATTACCGATTCGAGAATGATGAATTCCCGCATTCTGATGTCAAAAAATGTGGTAATGCAGGTGAGATGCAAGTACAAGGCCCGCTTGATCAACTTCCCTCTGAAAACTTTAATCAATGCTTAGGAGTTGAGTTGTCAACATCAGCACAAGAACAAACTTCTGCATTGGTAACCGGTATATCTAGTATAAACCACGGGAGAGAGGGGAGTGAAATGGAAATGGTTTGTGCTGTAACGGGTTCTCTTCCGAATTCTAAAGAAGGTGAAGTTGAGAAGGTAGAGCAATGTGACTTAATGGTTACTCAAGGATTGCATGTTTCTTTGGAAGATAAATATGAAATGAAAAATGAAAGGAATTTAGAAAAGTCAACTTGTGCAAACAATGCATCTATTTCTTCAAATATTCAGATTGAAAATGAAGACATAGAAGAGGGAGAACTTGTTGGAGACTTTGGAGTGGATTGTAGTTCATTTGGCATGCCTACTGCAGATTCCTTTATTCCTCAAACGAAAATTGATGAGGTTCAGAACCCCAAAAGTATTAATATGGGGAATACAAAAAAGGAAGGTTTAGGCAAAGAAATAGGTAGGAAACTGGTTACTGACATGCCAATAAATTATGTTCAAAATCAAGTCTTGCACAAATGCATATTGGAAGAGGACTCTGACAAGGATCATGGAAACCCTGCTGCATCAGAGAAGGTTGATGTCAGCTGTAAGAAAAAGCATGGCCCTGGTTCTGCGGAAAAGAAAGCAAAAAAGAAGGAAAAAAAGCGGAAAAAACGGGCAGAAAAGAACAAACAACTTGGTGTTAAAAGGTTGAAGTTGTCTCTAGTACAACAGAAACCAAAAACTATCTCTTATTGTCGCCATTTTCTTCTTGGAAGATGCTATAAGGGTGACAAGTGCCATTTTTCACATGATACAGTGCCTTCTACCAAATCAAAGCCATGCTCCTTTTTCGCTCGTCACTCCTGCATGAAAGGGGATGACTGCCCTTTTGATCATCAACTCTCCAAGTATCCTTGTGTTAACTTTGTGTCCGGAGGTTTTTGTGTCAGAGGTGATGCATGCTTGTTTTCGCACCAGTCACCAGCCAAGGAAGATTTTGCTACACCTTCAAGGATTCGCAAACCAGGAATGAAATCTCCACACTTTTCAGGAAACACAAATTCCAACATGCCAGCTAACATTCATGGCTGTAGTTCTATCCAACAAAACCATTTAATCAATCCTCCAAGAGTTCATTCTGACATCAATTTGGAAATTCCAAAGAAATTGCCAGCTAGGATTCCAAAGGGAATTAACTTTCTTGCTTTTGGAAAAGATCATGTGTGCAGTTTTAAGAGTTCTATTAACTCCCTTGTAAATGGGGAAAATAGTATTGATTTGCTCCGGAATATAGGTTTCAGTTTGCTTGATCATACTAGTTCATCCTTAAAAGATGCAACAAAAGAAAGGGTACCACAGACTGTCTCCAGTGAGATTTCTGATAAAAATCAATCTGTGGCAGAAAGTATAAAATTGAGTTTTCCCGGAAAAGCTTCAATGAATGATGCTTCAACTGGTTTACAAGGTAGCTCTGATGTGGATAACAACGAAAGTAAACCAGTCCAAGAGGCAAGAGGGGCATCTGATTCTTTTCAAATTTCCGCAGCAACACCGTCGCCATTTATGCGTCTGGTTTCTCCTTCATCTTCAGAACAGCTACCATCTAGAGAGGAGCTCTTGTCGACTGTATTGTCATTTGCAGCAGAGCATGAATCAGTTATTAAGATGAAAGATTCTGCTGGCACTTCAACTGCATAA 2226 0.4043 MTEERISFRKKAEKKEKGPEFSEFVGSDFIHPKDAVPIESIQEFDETVEGTGNKGRVCVVNDIVLGDIEEMMGIEEVEDTSRTLLQDRCNDADKEQQRIMDELELVVNGTQNIICDSGLISLSAGLGEEQNGSRAVEPMDYRFENDEFPHSDVKKCGNAGEMQVQGPLDQLPSENFNQCLGVELSTSAQEQTSALVTGISSINHGREGSEMEMVCAVTGSLPNSKEGEVEKVEQCDLMVTQGLHVSLEDKYEMKNERNLEKSTCANNASISSNIQIENEDIEEGELVGDFGVDCSSFGMPTADSFIPQTKIDEVQNPKSINMGNTKKEGLGKEIGRKLVTDMPINYVQNQVLHKCILEEDSDKDHGNPAASEKVDVSCKKKHGPGSAEKKAKKKEKKRKKRAEKNKQLGVKRLKLSLVQQKPKTISYCRHFLLGRCYKGDKCHFSHDTVPSTKSKPCSFFARHSCMKGDDCPFDHQLSKYPCVNFVSGGFCVRGDACLFSHQSPAKEDFATPSRIRKPGMKSPHFSGNTNSNMPANIHGCSSIQQNHLINPPRVHSDINLEIPKKLPARIPKGINFLAFGKDHVCSFKSSINSLVNGENSIDLLRNIGFSLLDHTSSSLKDATKERVPQTVSSEISDKNQSVAESIKLSFPGKASMNDASTGLQGSSDVDNNESKPVQEARGASDSFQISAATPSPFMRLVSPSSSEQLPSREELLSTVLSFAAEHESVIKMKDSAGTSTA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01012 741 Gene3D - 415 480 - -
Aip09g01012 741 SMART c3hfinal6 479 503 IPR000571 GO:0046872
Aip09g01012 741 SMART c3hfinal6 423 448 IPR000571 GO:0046872
Aip09g01012 741 SMART c3hfinal6 451 477 IPR000571 GO:0046872
Aip09g01012 741 ProSiteProfiles Zinc finger C3H1-type profile. 422 449 IPR000571 GO:0046872
Aip09g01012 741 MobiDBLite consensus disorder prediction 391 406 - -
Aip09g01012 741 ProSiteProfiles Zinc finger C3H1-type profile. 451 478 IPR000571 GO:0046872
Aip09g01012 741 SUPERFAMILY CCCH zinc finger 422 447 IPR036855 GO:0046872
Aip09g01012 741 MobiDBLite consensus disorder prediction 361 406 - -
Aip09g01012 741 SUPERFAMILY CCCH zinc finger 480 503 IPR036855 GO:0046872
Aip09g01012 741 Pfam RNA-binding, Nab2-type zinc finger 456 475 - -
Aip09g01012 741 Pfam RNA-binding, Nab2-type zinc finger 481 501 - -
Aip09g01012 741 Pfam RNA-binding, Nab2-type zinc finger 428 446 - -
Aip09g01012 741 Coils Coil 386 407 - -
Aip09g01012 741 MobiDBLite consensus disorder prediction 654 688 - -
Aip09g01012 741 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 249 577 IPR045124 GO:0003723|GO:0045892
Aip09g01012 741 PANTHER PROTEIN SUPPRESSOR OF SABLE 249 577 - -
Aip09g01012 741 MobiDBLite consensus disorder prediction 653 688 - -
Aip09g01012 741 ProSiteProfiles Zinc finger C3H1-type profile. 481 504 IPR000571 GO:0046872
Aip09g01012 741 MobiDBLite consensus disorder prediction 361 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01012 Aip-Chr9 14324991 14331202 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip09g01012 zf-CCCH_2 4.4 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01012 - - aip:107615152 1449.49