Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00999 ATGGCTAGTATCCTTTGGCACTTTGTTTTGCCCATTTTTCTTGCCACCCTTTTCTCTCCAAGCCCTACTTATGGTGCCAAGCAATCCAAAATAATTGGCATGAAAATGAATGTGATTGATCGGTGCTGGAGACGGGATCCCCAATGGAGGAGCCACCGCGCGCAACTCGCGAACTGCTCCATTGGCTATGCTGGCAAGATGATGAACAACATTGGCAGTGACCTCATCCATTATGAAGTTATAGACCCTACTGATGACCCCATAAACCCTAAGCCTGGTACCTTGCGATATGGAGCTTCTGTGATTCAACAAAAAGTTTGGATCACATTTAAAAGAGACATGAAAATTACATTGGCAAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGCCGCGGCGCCAACGTCCACATTGCTCATAACGCATGCTTTATGATCTTTAAGGCGACGAACGTAATAATCCACAACGTTCGGATCCATGATTGTAAAGCACAAGCTCCGGGATTGGTGATGGGTGCAAATGGGAAGGTGATTTCATTAGGTCAAGTTGATGGGGATGCCATTAGATTAGTCACTGCTTCAAAGATTTGGATTGATCATAATACACTTCAAGATTGCGAAGATGGTCTTCTTGATGTTACACGGGGTTCCACTGATGTCACTGTCTCCAATAACTGGTTCCGGAACCAAGATAAGGTTATGCTTCTTGGGCATGATGATGGATATATTAGAGACCAGAACATGAAAGTTACTGTTGTGTACAATCATTTTGGACCAAATTGTAACCAGCGTATGCCAAGGATCCGTCATGGATATGCACATGTAGCAAACAATCTATACCAGGGATGGATGCAATATGCTATTGGTGGAAGCATGGGACCTAGCCTCAAAAGCCAATCTAACCTCTTCATAGCCCCCGAATCTGGGAACAAGGAGGTGACATGGAGAAAAGGCAACAGCGAAAATGGGAACATGTGGGAATTCCATTCTATAGGGGATGCTTTTGAAAATGGAGCTTCTTTCACGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGTGAGGAACAATATTTTAAGGTTCTTGATGCTAAATCTGTCAGATTTTTGACAAGATCCTCTGGCGTACTATGA 1140 0.4368 MASILWHFVLPIFLATLFSPSPTYGAKQSKIIGMKMNVIDRCWRRDPQWRSHRAQLANCSIGYAGKMMNNIGSDLIHYEVIDPTDDPINPKPGTLRYGASVIQQKVWITFKRDMKITLAKPLLISSFTAIDGRGANVHIAHNACFMIFKATNVIIHNVRIHDCKAQAPGLVMGANGKVISLGQVDGDAIRLVTASKIWIDHNTLQDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSMGPSLKSQSNLFIAPESGNKEVTWRKGNSENGNMWEFHSIGDAFENGASFTVTKGGRVPKPNYSEEQYFKVLDAKSVRFLTRSSGVL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00999 379 SMART amb_all 113 310 IPR002022 -
Aip09g00999 379 Gene3D - 36 379 IPR012334 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Aip09g00999 379 PRINTS Pollen allergen Amb family signature 358 379 IPR018082 -
Aip09g00999 379 PANTHER PECTATE LYASE 18-RELATED 17 379 IPR045032 GO:0030570
Aip09g00999 379 SUPERFAMILY Pectin lyase-like 30 366 IPR011050 -
Aip09g00999 379 Pfam Pectate lyase 126 304 IPR002022 -
Aip09g00999 379 PANTHER PECTATE LYASE 17 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00999 Aip-Chr9 14065022 14066903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00999 67 319 Polysaccharide Lyase AT5G09280 72.332 1.74e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00999 K01728 - gmx:100780437 638.647