Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00966 ATGGAGGCTGAAGAAGGCTGGCAGCGTCAAGTAAGCAGAAGAAGTAGAAGACTGGGAGGGACAAAGGTCGAAGTAAGAGACAAATGGGCGGGTGATCAGAAGAACAAATGGGAGAACATAAAGAGGAACTCGCATTCGGTGTTTGTCAATAATTTACCATGGGAGATAGCTAAAGGGACTCTATTTAAGGCGTTCGGATTTGTCGGTGTGGTGACTGACATATATATCTCGAGGAAGAAGAGAAGAGGCATTGCATCTCCCTTTGCATATGTAAGGTTTGATGCTAAAGGTGGAGCGGAAACAGCGGTTTATAAGCTTAACGGGGTGTGTATTGGAAGCAAATGGATGACGAGCAAGGAGATAGTGCATAGCCAAAAATCACTAAGTGTGGCTATTAAAGAGAAGAGAGGTAAAGAGTTAATTGAAGCAGAGATATCGAGCGCACAAGTCGAGATGTTGAAGAGGAGTATTGTACGAGAGAACTCCAAACCGATAGTTTTCTCCAAGATGATGGAAAGTATTGGGGAGAAGTGGGAAGGTCCGGGAAGGGTGGAGTGCATAGATATTGGTCCTTTCAGGTGCTTGCTTACCTTTGAATTGGAGGAATATAAGAAAGTTGCTTTGAAATCAGAGGCCTTGGCCAGATTATTTGATGAGTTGAAACCTCATAATGGGATGATTTAG 684 0.4357 MEAEEGWQRQVSRRSRRLGGTKVEVRDKWAGDQKNKWENIKRNSHSVFVNNLPWEIAKGTLFKAFGFVGVVTDIYISRKKRRGIASPFAYVRFDAKGGAETAVYKLNGVCIGSKWMTSKEIVHSQKSLSVAIKEKRGKELIEAEISSAQVEMLKRSIVRENSKPIVFSKMMESIGEKWEGPGRVECIDIGPFRCLLTFELEEYKKVALKSEALARLFDELKPHNGMI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00966 227 CDD RRM_SF 47 117 - -
Aip09g00966 227 SUPERFAMILY RNA-binding domain, RBD 36 116 IPR035979 GO:0003676
Aip09g00966 227 Gene3D - 2 139 IPR012677 -
Aip09g00966 227 SMART rrm1_1 46 119 IPR000504 GO:0003723
Aip09g00966 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 114 IPR000504 GO:0003723
Aip09g00966 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00966 Aip-Chr9 13334312 13335094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00966 46 116 Eukaryotic Initiation Factors Gene Family AT1G22760 35.211 4.90e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00966 - K18622 ahf:112794598 360.147