Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00889 ATGGTTTTAACTTTGGAAAAATTTGGTGAAATTTTGCAATTAAGGGCATTCAAAATATCTATAGAAGGTTATGTTCTGCTTCAGTTTGCACCCACAGTTGCTTCGCGCCAGTATGACTGGACTAGAAAGCAAGTATTCTCATTATCAATGGGTGAAATGGGAACTGTGATTCTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCGTATAAAGGGCAAAAGTATCTCTTCAGATTTTGGTGAAGAAAGTGGCGGGAGTGATCGGACTATCTAA 276 0.3949 MVLTLEKFGEILQLRAFKISIEGYVLLQFAPTVASRQYDWTRKQVFSLSMGEMGTVILGARESCEFFHDRIKGKSISSDFGEESGGSDRTI 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00889 91 Pfam Whirly transcription factor 13 75 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aip09g00889 91 Gene3D Transcriptional Coactivator Pc4; Chain A 2 86 IPR009044 GO:0003677|GO:0006355
Aip09g00889 91 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 12 75 - -
Aip09g00889 91 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 12 75 IPR013742 GO:0003697|GO:0006355|GO:0006952
Aip09g00889 91 SUPERFAMILY ssDNA-binding transcriptional regulator domain 13 79 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00889 Aip-Chr9 11813873 11814938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00889 16 75 Whirly Transcription Factor Family AT1G14410 67.213 3.79e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Aip09g00889 Whirly 6.9e-22 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00889 - - adu:107478549 100.523