Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00878 ATGTCTTCTTCATCACTCGGCGCCCATCCTCCGTCGGATTCTTCCTGCTGCTCGTGGTCGTCTTGTCGCCGTCGTCTCGACGTCATTATCTCGAAGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCAATTTGCAAGATCTGGGATGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGGCTTACTCACTGAGGGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACAAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTCCATTGAACGGATTTAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGGTAACTTGGTCGAATTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAGGGTAACGTTGTGGCAGTCTTTTGCTTTTGAATTGCTCAAATATCTAGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTTGTGGCTTGAGGGAACTTGATAAAAAATATTTCTGTCCCAATTACATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTAAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTCTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAATATATTGAAGAGATTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGCAAAGTGGGTTGTGGTGGAGGACTAA 1584 0.4198 MSSSSLGAHPPSDSSCCSWSSCRRRLDVIISKKLKVRVIRLWTVSQFARSGMKAPIEMVVLDEEGDTIQCTVKDIFVPIFEGLLTEGNVYVVTNFGVALNTIKFKPTRHKFRIHFKRDTIVRPVQDSSVPLNGFNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGGQKLRVTLWQSFAFELLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCGQPVSDEEDFLRLSVYKTIAEIKEHNQDAVFVTAGTIKEVETEFGWWYKGCKKCRCGLRELDKKYFCPNYIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEAAKFLGVSAKDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKACESEPTPSPAVDEKHNSKILGAKKYIEEIGEESVSSKSKKAKWVVVED 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00878 527 CDD RPA1_DBD_B_like 154 254 - -
Aip09g00878 527 SUPERFAMILY Nucleic acid-binding proteins 34 126 IPR012340 -
Aip09g00878 527 Gene3D - 30 127 IPR012340 -
Aip09g00878 527 Pfam Replication factor-A C terminal domain 305 427 IPR013955 -
Aip09g00878 527 PANTHER REPLICATION FACTOR A 1, RFA1 44 451 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g00878 527 Gene3D - 128 262 IPR012340 -
Aip09g00878 527 CDD RPA1_DBD_A_like 33 121 - -
Aip09g00878 527 SUPERFAMILY Nucleic acid-binding proteins 134 258 IPR012340 -
Aip09g00878 527 CDD RPA1_DBD_C 293 426 IPR013955 -
Aip09g00878 527 Pfam Domain of unknown function DUF223 57 147 IPR003871 -
Aip09g00878 527 SUPERFAMILY Nucleic acid-binding proteins 290 439 IPR012340 -
Aip09g00878 527 Gene3D - 282 451 IPR012340 -
Aip09g00878 527 PANTHER BNAC07G49340D PROTEIN 44 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00878 Aip-Chr9 11581345 11586436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00878 34 435 Core DNA Replication Machinery Family AT5G08020 23.684 5.79e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00878 - - adu:107477146 953.74