Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00877 ATGGATAGACAATATGATTTGTTAGAGATGATTGCACCGCCAAAAGAGAGCTGGAAGATTCATGTCAGAGTAATCAGACTCTGGTCTTTACCAAAATTCAAAGACCCCAAATCCAGTAGCTCTATTGAAATGGTGTTGATGGATGAGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCAGATATTCCTGAGGCTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACCTGTCTGTGGTTTCTGGCAAACCAGCATATCTTGATGAAGATGAAGTTTTATATTCCATTGGGAGGAAGACAATAAAGGAGTTACGTGCTGCTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTGTTTGCAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGATGGCTGTAATAAGAACGTGAATAATGTGGTTGACAGGTATAAGTTGAATTTGTTGGTTTTTGATGGTACTGGTACAACGAACTTTGTTGTGTTCGATAAGGAGGTCGCAGCACTATTCGGACGAACATGTACTGAGATGGTGAAAGAGTTGAATGAGTTTCTATTCAAGGTCGAAGTAAAAACTACTGGATGGTGCGATTCTTATGATGTATCGGTGATACGTTCTGATTCTACCAATTTACCGAGGTGGAGGGACACTCAAGGCCCGTCTCGAGGTGAAGATGGATGTTCTGTTTGTGATGAGTCACCTTATCCAATTGTGAAAAATTTGTCTGTTATTAAAAGACCTGTTGTGAGGCGTCTGTTGGATGAGTTCAACATGTCTGGTACTCCTTCCATTAAAAAGTAG 861 0.4123 MDRQYDLLEMIAPPKESWKIHVRVIRLWSLPKFKDPKSSSSIEMVLMDEQNIMYGTRLLINPDIPEALMLRKREISQYLSVVSGKPAYLDEDEVLYSIGRKTIKELRAAADVGFYVVRATVLDVEPVPSWWYKSCVCSVKAEANADEYFCDGCNKNVNNVVDRYKLNLLVFDGTGTTNFVVFDKEVAALFGRTCTEMVKELNEFLFKVEVKTTGWCDSYDVSVIRSDSTNLPRWRDTQGPSRGEDGCSVCDESPYPIVKNLSVIKRPVVRRLLDEFNMSGTPSIKK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00877 286 CDD RPA1_DBD_C 101 211 IPR013955 -
Aip09g00877 286 Gene3D - 8 74 IPR012340 -
Aip09g00877 286 SUPERFAMILY Nucleic acid-binding proteins 99 221 IPR012340 -
Aip09g00877 286 Pfam Replication factor-A C terminal domain 114 200 IPR013955 -
Aip09g00877 286 PANTHER REPLICATION FACTOR A 1, RFA1 50 195 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g00877 286 PANTHER REPLICATION FACTOR A 1, RFA1 20 51 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g00877 286 Gene3D - 92 232 IPR012340 -
Aip09g00877 286 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 51 - -
Aip09g00877 286 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 50 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00877 Aip-Chr9 11574605 11579250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00877 56 237 Core DNA Replication Machinery Family AT5G61000 25.248 2.54e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00877 - - ahf:112729129 441.425