Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00871 ATGGAATTCACCTCTTTTTCATGGGAAATCAATTCCATTGAATACCCACCCATACCACAAGAATGCTTTTTCCATGATTTCTTCTCCATCATCTTCAGTTTCACCAAAGAATTGATCCAAATTACCCAGCCCGCAGACCAAACCTCTGACTTTGACTTTTCGTCTTCTACAACTACGACTGCCAATGAAGCTTTCTTGGTTCCCTTCCATGTCCTGTGTAATCGTAACGGTGAAAACACCGCATTTTTACATGAAATCTTCTCTTCGGTGCCTATATCCTCTCAGTTATTGGACCAAATTTTACCTGACATGGGTGAAACCGCAAGAACAATTCTAAGTCGTGAAGGGCGTGAATCCGGCATGCCAGAGATTACTGTGAACCTTTATGTTACGACGCACATTGTTGTGGAAGATTCTGATTTCTACAATGATGATCTCCGTCAAGATGTTCCTGAACTAGCCCGACTCGTGAATCTGTTGGAGAGACCCAAAATTGATAAGCGAGATGATGATGCTGAAGAATGCAGTATTTGCTTGGAAGAGTTTGGACATGGTATTGAAGATTCGAGTGTAGAAGTTGTTCGCACAAGTTGCTCGCATGTTTTTCACGAACGCTGCATGTTCCGTTGGCTCCGACGTTGTGCCGACCATCAATCGCCGTATTCTTGCCCATTGTGCCGCTGCATCATATTTCCAACTTCACAGAGAGATGAATAG 717 0.4338 MEFTSFSWEINSIEYPPIPQECFFHDFFSIIFSFTKELIQITQPADQTSDFDFSSSTTTTANEAFLVPFHVLCNRNGENTAFLHEIFSSVPISSQLLDQILPDMGETARTILSREGRESGMPEITVNLYVTTHIVVEDSDFYNDDLRQDVPELARLVNLLERPKIDKRDDDAEECSICLEEFGHGIEDSSVEVVRTSCSHVFHERCMFRWLRRCADHQSPYSCPLCRCIIFPTSQRDE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00871 238 Pfam Ring finger domain 174 227 IPR001841 -
Aip09g00871 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 231 IPR013083 -
Aip09g00871 238 CDD RING-H2 175 227 - -
Aip09g00871 238 SUPERFAMILY RING/U-box 174 232 - -
Aip09g00871 238 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 164 228 - -
Aip09g00871 238 SMART ring_2 175 226 IPR001841 -
Aip09g00871 238 ProSiteProfiles Zinc finger RING-type profile. 175 227 IPR001841 -
Aip09g00871 238 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 164 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00871 Aip-Chr9 11492847 11493563 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00871 171 231 C3H Transcription Factor Family AT4G12190 39.344 2.77e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00871 - - adu:110273516 375.555