Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00827 ATGGATCGAATTAGGACTCCTTTCTTGGAAAAAGGAGAGTATAGAGAAGATGTGTTATTCTATGGGAATCCAAACTTTGGAGTTACAACAAGCTGGATGAGCATGGCGGTGTATGAAGCTGATTTTAGTTGGGGAAGGTTGGTTCACTTTGGTCAAGGTGCTTTGTTTCCCTTTGATAGGGGATTGTTGGCTCTAAGCCCAGACATGGATGGATCTATTCTTGAGAAAAAGAGTGAGCCCCCTGCTTCTTCCACGCACCTATTTCTCTCTGCTCTGTTCTACACGCTAACAATGGAGTTGGAAGCTGAACTGGTAACTGCTAACGAAAGTTCTGCTGAAAAAACAGTAGGACCATGTGTGGGCGCTTCAATTTTGGAACCATATATTGGTATGGAATTTGATTCTGAAGCTGATGCCAAGAACTTTTATGATGAATATGCAAGACAGGAAGGGTTTATTGTGCGCATTGATAAATGTCATCGTTCTGAAATTGACAACAGAATTATTTCTCGTCGTCTTACTTGCAATAAGGAAGGTTTTCATGTGAGAGGGAAAAATGATAAAGTCAACCCTTATCGGAAACCACGGGTTAGCATAAGAGAAGGCTGCGAGGCAATGATGATGGTCAAAGTTAATAAATGTGGGAAGTGGGTTGTTACTAAATTTGTAAAAGAACATAGTCATCCACTGATGGGTTCTGGTGTTCGTTCTTATCGTACAACAGAATCGAAGGATAAGAGAATTCGACAACTCACAAAGGAACTCGAGCGTCGAGATCAGCAATGTCAGCAATATCGCAAGCTGATACTTTCCCTTCTGGAAACTGTTGAGGAGCAAAATAAATTCTTATCAACGAAAGTTGAACATGTTGTTCAGTGTGTGAAACAACTTGAGAATGATGTGCAAAAACCTTTGGACACTAGCTAG 927 0.4088 MDRIRTPFLEKGEYREDVLFYGNPNFGVTTSWMSMAVYEADFSWGRLVHFGQGALFPFDRGLLALSPDMDGSILEKKSEPPASSTHLFLSALFYTLTMELEAELVTANESSAEKTVGPCVGASILEPYIGMEFDSEADAKNFYDEYARQEGFIVRIDKCHRSEIDNRIISRRLTCNKEGFHVRGKNDKVNPYRKPRVSIREGCEAMMMVKVNKCGKWVVTKFVKEHSHPLMGSGVRSYRTTESKDKRIRQLTKELERRDQQCQQYRKLILSLLETVEEQNKFLSTKVEHVVQCVKQLENDVQKPLDTS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00827 308 Coils Coil 248 268 - -
Aip09g00827 308 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 97 305 - -
Aip09g00827 308 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 97 305 - -
Aip09g00827 308 Gene3D - 6 79 IPR023213 -
Aip09g00827 308 Pfam FAR1 DNA-binding domain 141 231 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00827 Aip-Chr9 10727302 10731771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00827 21 73 Monolignol Biosynthesis Gene Families AT5G48930 42.593 5.17e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip09g00827 FAR1 3.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00827 - - pvu:PHAVU_010G032600g 260.766