Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00771 ATGCCTCCGAGAACGGTGAAGCGTGGCGGCACTCCGGGAAGAAGGGGTGGAAGAGGAGGCCGGGGGCCCTCGAAGGCCGGGCAGAATCAGCAGCAGCAGCAGCCGAACCCTGAAGCTGTGGAGGAAGCGGGGAAGCTCGAGGAAAAGCCGATTATGGAGGATGAGCCAAAAGCCGAAGTGAACCCTGTTCTTGAAGAGAAACCTGTCGTTGTTGAAGAGGAGAAGCCCTTTGTTGAGGAACAAGCGATTGATATGAATCAAATGGCTCCTGAAGCTGTAGAAGAAGCAGCAACAACACACGTGCATAATGGATCAGCTGTGGCGAAAAACGAGGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACGGTTAGATTTGGAGGATAATGATCCCGAATATGAACCGGAGGAATATATTGCAGTTGATTATGATGAGAAGGAAATTGAACAAGACGAGGTTCATCAGGTGGTTGATGAAGTAGAGGAAGAAGCGGAGGATAATGGCGGTGAAGAAGAGGGTGACACAGGTGAGGAAGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGAAGAAGATGAGGAGCATGCTGGAGATGAGCATGAGCATGCTGATTTGGTTGATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGAAAAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTTGACAAGGATGCTACTGAAGATGATCTGAGGAAGGTGTTCAGTGAAGTTGGGGTGGTCACTGAAATTAACGGAAAACAATGTGGTGTAACACCAAGTCAGGATAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTACAAATGTTGAGGATATAACACTAGTAGAAGATAGTAATGATGAAGGAAAGAACCGAGGATTTGCATTTTTGGAATTTTCCTCTCGGTCAGATGCTATGGATGCATTTAAACGACTTCAAAAGAGAGATGTTGTGTTTGGAGTAGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAAACTGTTTTTATTGATGCACTCTCTCCTTCATGGGATGAAGATTATGTTCGGGATCTTCTTAAGAAATTTGGGGACCTAGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCCCGTAGGAAAGACTATGGATTTGTTACATTTGCCACACATGAGGCTGCAGTAAGATGTGCTGAAAGTATTAGCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAAGTTAGGGCTAGGTTGTCAAGACCACTTCAGAGAGGCCGTGGAAAACATATCAGTCGTGGGGACTACCGCCCTGGTCGTGGTTCTGCAACAATGGCCAGACCTTCATGGAGCCGACCTGCACCACGTAGTTTTCCTCCCCCTCGCACGGTTAGGGGAATTGGAAGTCGTCTTCCACCAGTCAGGCCAGTTAGTGTGAGAGATAGACGTCCTATCATGTCAGTGCCAGTAAGAAGTAGGCCTATGCCTCCTCCAGCCAGATCCTATGAGAGGAGACCTCCTCCTCCTACATATCCTAAAGTTAGTACAAAGAGAGATTATGTTCGACGTGAGGACATACCGCCTCCTAGAAGTAGAGTTGCTACAGATTATGGTTCAAGGATGGCCTCTGAAAGACGTCCATCATACAGGGATTATCCAGCCCGTGGTCCTGCATATTCTGATATTCCAAGAAGTACGGCTCGTGCTGCACCAAGGAGAGGTTACGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCCCCTCCGCCACCCTCTGCACACATGAGTTACCGTGAAGGACGACCCCGCGACTATGATGCTCTCTCTGGCTCAAAACGTTCTTATGCTTCCATAGATGATGTTCCTTCACGATATGCGGATACTAGTGCTCGTCAATCAAGAGCTCGTTTGGACTATGAATATGGTGGTAGTGGTTCTCAATATGGAGATGCTTACGGTGACAGGCTGGGAAGATCTAGTCTGGGGTATGGTGGAAGCAGCAGAAGTTCAATGTCTAGTCAGGATTCCCATGGGATGTATAGCAGTCGACAAGGCATGGGTTATGGTGGAGGTTCCTTTGGTAATAGTGATGTTGGTGGGATGTACTCATCAAGTTATGGTGGTGATTACATTTCACGAGGAAGTGATGTTGGAGGCAGCTCATACTCAACTATGTATTCTGGCAGGGGTGTGGGTGGTAGTAGCAGTTACATGGGTGGTGGAGGTGGCTCCGGCTCTTATTATTAG 2340 0.4688 MPPRTVKRGGTPGRRGGRGGRGPSKAGQNQQQQQPNPEAVEEAGKLEEKPIMEDEPKAEVNPVLEEKPVVVEEEKPFVEEQAIDMNQMAPEAVEEAATTHVHNGSAVAKNEEEEVKESIDEYEKDERLDLEDNDPEYEPEEYIAVDYDEKEIEQDEVHQVVDEVEEEAEDNGGEEEGDTGEEEVEDVHDEIEGEEDEEHAGDEHEHADLVDVEEEEHREVVKERKKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKFGDLEKIELARNMPAARRKDYGFVTFATHEAAVRCAESISGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRPGRGSATMARPSWSRPAPRSFPPPRTVRGIGSRLPPVRPVSVRDRRPIMSVPVRSRPMPPPARSYERRPPPPTYPKVSTKRDYVRREDIPPPRSRVATDYGSRMASERRPSYRDYPARGPAYSDIPRSTARAAPRRGYVDDGYGQRFERPPPPPPSAHMSYREGRPRDYDALSGSKRSYASIDDVPSRYADTSARQSRARLDYEYGGSGSQYGDAYGDRLGRSSLGYGGSSRSSMSSQDSHGMYSSRQGMGYGGGSFGNSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYSGRGVGGSSSYMGGGGGSGSYY 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00771 779 MobiDBLite consensus disorder prediction 200 223 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 1 67 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 124 150 - -
Aip09g00771 779 CDD RRM_SF 275 342 - -
Aip09g00771 779 CDD RRM_SF 372 446 - -
Aip09g00771 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 452 IPR000504 GO:0003723
Aip09g00771 779 MobiDBLite consensus disorder prediction 546 560 - -
Aip09g00771 779 Gene3D - 360 477 IPR012677 -
Aip09g00771 779 MobiDBLite consensus disorder prediction 24 38 - -
Aip09g00771 779 Gene3D - 272 356 IPR012677 -
Aip09g00771 779 MobiDBLite consensus disorder prediction 520 543 - -
Aip09g00771 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 259 - -
Aip09g00771 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 259 779 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 41 67 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 158 199 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 106 123 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 93 223 - -
Aip09g00771 779 SUPERFAMILY RNA-binding domain, RBD 271 437 IPR035979 GO:0003676
Aip09g00771 779 MobiDBLite consensus disorder prediction 452 662 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 693 712 - -
Aip09g00771 779 Coils Coil 147 167 - -
Aip09g00771 779 SMART rrm1_1 371 446 IPR000504 GO:0003723
Aip09g00771 779 SMART rrm1_1 231 353 IPR000504 GO:0003723
Aip09g00771 779 Gene3D - 146 262 IPR012677 -
Aip09g00771 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 260 IPR000504 GO:0003723
Aip09g00771 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 341 IPR000504 GO:0003723
Aip09g00771 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 437 IPR000504 GO:0003723
Aip09g00771 779 PANTHER RNA RECOGNITION MOTIF 1 259 - -
Aip09g00771 779 PANTHER RNA RECOGNITION MOTIF 259 779 - -
Aip09g00771 779 MobiDBLite consensus disorder prediction 690 714 - -
Aip09g00771 779 Coils Coil 105 128 - -
Aip09g00771 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 357 IPR000504 GO:0003723
Aip09g00771 779 SUPERFAMILY RNA-binding domain, RBD 226 259 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00771 Aip-Chr9 9740510 9746756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00771 272 445 Eukaryotic Initiation Factors Gene Family AT1G22760 25.862 5.86e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00771 - - aprc:113850151 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g00771 09 9740510 9746756 Aip09g00771 09 9740510 9746756 ECH
Aip09g00771 09 9740510 9746756 Aip04g03102 04 124328145 124334133 PCT