Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g00735 ATGCATGCTTCTGTAGGTGAGGATTTGATATCTGTGTTCGAGTCATCGATATCGGAAGGAACTGTGTATGTTTTTACATACTTTGGAGTTAACAACAACTGTGGGTTGTATCGCACAACATCGCATCAATTTCGGTTGTTTTTTCAAGATAGAACTACTGTCTTACCCTCTTTCTGTGATGCAATACCGTTACATGGTATTAAGTTGGTCCCTTTTAGGGAAATTATGGGATACTCTCCTCATCATCCTTTTTTGGTTGACGTTGCTGGAGTTATGGCCGGCGTGGAGGGTGAGAGAAAATACATGAACGATGACAAACTTATTAACATGATGGTCATTCATATTGAGAATGACGGTTTACGGCTTAATATTATTGTTCTTGGAGAGATGGTGGACCGGATCAAGAATTTTCTAGCATCGGGCGATCAACAACTGCCAATAGTTATTTTTCAATTTGCAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCAGATATTCCTGAGGCTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACATGTCTGTGGTTTCTGGCAAACCAGCATATCTTGATGAAGATGAAGTTTTATATTCCATTGGGAGGAAAACAATAAAGGAGTTACGTGCTGCTGCGGATGTTGGATTCTATATTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTGTTTGCAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGATGGCTATAATAGGGACGTGAATAATGTGGTTGACAGGTATAAGTTGAATTTGTTGGTTTTTGATGGTACTGGTACAACGAACTTTGTTGTGTTCGATAAGGAGGTCGCAGCACTATTCGGACGAATCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGAAAGCAAGCAAAGATCCTACTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTCTATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATACTTATGATGTATCGGTGATACGTTCTGATTCTACCAATTTACCGAGGTGGAGGGACACTCAAGGCCCGGTAAAATCTGGTGTACCCCGTGCTGGTCCTATTAACCCTATGCATCCTCGAGGTGAAGATGGATGTTTTGTTTGTGATGAGTCACCTGATCCAATTGTAAAAAATTTGTCTGTTATTAAAAGACCTGTTGTGAGGCGTCTGTTGGATGAGTTCAACATGTCTGGTGCTCCTTCCATTAAAAAGTAG 1308 0.4067 MHASVGEDLISVFESSISEGTVYVFTYFGVNNNCGLYRTTSHQFRLFFQDRTTVLPSFCDAIPLHGIKLVPFREIMGYSPHHPFLVDVAGVMAGVEGERKYMNDDKLINMMVIHIENDGLRLNIIVLGEMVDRIKNFLASGDQQLPIVIFQFARVKNAGGTNIVQNIMYGTRLLINPDIPEALMLRKREISQYMSVVSGKPAYLDEDEVLYSIGRKTIKELRAAADVGFYIVRATVLDVEPVPSWWYKSCVCSVKAEANADEYFCDGYNRDVNNVVDRYKLNLLVFDGTGTTNFVVFDKEVAALFGRICTEMVKELNEKGKASKDPTGFNEFFLDKEFLFKVEVETTGWCDTYDVSVIRSDSTNLPRWRDTQGPVKSGVPRAGPINPMHPRGEDGCFVCDESPDPIVKNLSVIKRPVVRRLLDEFNMSGAPSIKK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g00735 435 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 30 304 - -
Aip09g00735 435 Gene3D - 207 366 IPR012340 -
Aip09g00735 435 Pfam Replication factor-A C terminal domain 229 351 IPR013955 -
Aip09g00735 435 Pfam Domain of unknown function DUF223 1 75 IPR003871 -
Aip09g00735 435 Gene3D - 1 56 IPR012340 -
Aip09g00735 435 CDD RPA1_DBD_C 216 359 IPR013955 -
Aip09g00735 435 PANTHER REPLICATION FACTOR A 1, RFA1 30 304 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip09g00735 435 SUPERFAMILY Nucleic acid-binding proteins 214 353 IPR012340 -
Aip09g00735 435 Gene3D - 61 195 IPR012340 -
Aip09g00735 435 MobiDBLite consensus disorder prediction 368 387 - -
Aip09g00735 435 SUPERFAMILY Nucleic acid-binding proteins 68 188 IPR012340 -
Aip09g00735 435 CDD RPA1_DBD_A_like 1 54 - -
Aip09g00735 435 SUPERFAMILY Nucleic acid-binding proteins 1 56 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g00735 Aip-Chr9 9189311 9192256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g00735 62 331 Core DNA Replication Machinery Family AT5G61000 22.727 1.62e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g00735 - - ahf:112729129 854.744